Factsheet for PGSC0003DMT400044321

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090370.2.1	Tomato	nucleus	87.8	95.66
KRH45305	Soybean	nucleus	54.91	56.4
GSMUA_Achr8P29340_001	Banana	nucleus	53.58	51.66
KRH37141	Soybean	cytosol, nucleus	37.4	51.65
EER87804	Sorghum	nucleus	46.42	50.58
AT2G34900.1	Thale cress	nucleus	51.46	50.26
TraesCS4A01G377900.2	Wheat	cytosol	46.68	50.14
Os06t0138000-01	Rice	cytosol, nucleus	16.45	50.0
TraesCS7A01G080900.1	Wheat	nucleus	46.42	49.86
TraesCS1B01G385900.1	Wheat	cytosol	45.09	49.71
HORVU5Hr1G097840.6	Barley	cytosol	45.89	49.43
TraesCS7D01G074500.1	Wheat	cytosol	45.89	49.29
TraesCS1A01G367300.1	Wheat	cytosol	45.36	49.0
KRH12139	Soybean	nucleus	44.83	48.42
HORVU7Hr1G018300.6	Barley	cytosol	45.09	48.3
TraesCS1D01G373000.1	Wheat	cytosol	45.89	48.19
Bra005383.1-P	Field mustard	nucleus	48.54	47.53
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	45.89	47.4
CDY31648	Canola	nucleus	48.81	43.29
CDX84278	Canola	nucleus	48.54	41.78
GSMUA_Achr8P34430_001	Banana	nucleus	46.42	40.7
Bra034451.1-P	Field mustard	cytosol	44.03	31.44
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	12.2	14.79
PGSC0003DMT400027387	Potato	nucleus	21.49	14.06
PGSC0003DMT400078795	Potato	nucleus	21.75	13.85
PGSC0003DMT400061998	Potato	cytosol	4.24	13.68
PGSC0003DMT400008041	Potato	nucleus	20.95	13.12
PGSC0003DMT400032373	Potato	nucleus	23.87	12.15
PGSC0003DMT400039787	Potato	nucleus	22.55	12.07
PGSC0003DMT400018643	Potato	nucleus	19.36	12.05
PGSC0003DMT400039290	Potato	nucleus	21.49	10.31
PGSC0003DMT400052108	Potato	nucleus	18.83	9.74

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:102580769	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0010030	GO:GO:0045893
InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M1BG05
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400017209	PGSC:PGSC0003DMG400017209
EnsemblPlants:PGSC0003DMT400044321	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00029503FA	RefSeq:XP_006354461.1	RefSeq:XP_015167373.1	SEG:seg

Description

Global transcription factor group [Source:PGSC_GENE;Acc:PGSC0003DMG400017209]

Coordinates

chr9:+:56698731..56705382

Molecular Weight (calculated)

43489.7 Da

IEP (calculated)

7.279

GRAVY (calculated)

-0.893

Length

377 amino acids

Sequence
(BLAST)

001: MENLNGLVPD IPIQEQKDNA AASENFGRSV DEMVGKVDQL EQRLNEVEHF YSNTSKKQSN TPRGGSILKD KEKQISSFRR RQHDASRREA AGSRRMQELM
101: RQFGTILRQI TQHKWAEPFM EPVDVKGLGL HDYFEVIEKP MDFSTIKNKM EAKDGSGYKH VREICADVRL IFKNAMKYNE ERDDVHVMAK TLLGKFEEKW
201: LQLLPKVDEE EKRRKEEEAE AQQDMQLAQE ATHAKMAKDL TIELDEVDMQ LEELREMVLQ KCRKISTEDR KQLGNALTKL SPEDLNKALL IVAQNDPAFQ
301: PTATEVELDM NAQSESTLWK LKFFVQDVLH AQGKSPASVK TNNVNTSNLL NNNNNKRRRE IYDVLAKSSQ KRSKKPS

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.