Factsheet for PGSC0003DMT400078795

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	PGSC0003DMT400063187	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091660.2.1	Tomato	nucleus	80.24	88.78
CDY08771	Canola	nucleus	28.72	48.02
CDX78390	Canola	nucleus	18.07	44.77
CDX70356	Canola	nucleus, plastid	18.41	44.13
CDY65645	Canola	nucleus, plastid	37.84	44.01
Bra024402.1-P	Field mustard	nucleus, plastid	39.19	42.57
AT5G65630.1	Thale cress	nucleus	40.54	40.68
AT5G10550.1	Thale cress	nucleus	39.53	40.28
Bra006068.1-P	Field mustard	nucleus	36.66	39.53
CDY65656	Canola	cytosol	13.51	38.65
GSMUA_Achr3P00480_001	Banana	nucleus	32.77	37.16
GSMUA_Achr1P15650_001	Banana	nucleus	30.74	36.99
Bra005311.1-P	Field mustard	cytosol, plastid	14.19	36.05
OQU82367	Sorghum	nucleus	17.91	35.1
Os04t0622800-00	Rice	cytosol	18.41	35.05
PGSC0003DMT400008041	Potato	nucleus	35.14	34.55
Os08t0192800-01	Rice	nucleus	27.87	34.3
Zm00001d002267_P001	Maize	plastid	26.01	34.15
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	25.51	33.11
TraesCS2B01G489500.1	Wheat	plastid	25.68	32.83
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	25.51	32.33
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.17	31.7
Zm00001d026333_P001	Maize	cytosol	25.0	31.42
KXG24660	Sorghum	plastid	26.01	31.3
Zm00001d049400_P001	Maize	plastid	25.17	30.79
Zm00001d024251_P001	Maize	cytosol	24.16	29.36
Zm00001d046528_P001	Maize	cytosol	7.09	28.0
CDX70357	Canola	plastid	17.91	26.97
PGSC0003DMT400027387	Potato	nucleus	26.01	26.74
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	12.67	24.12
PGSC0003DMT400044321	Potato	nucleus	13.85	21.75
PGSC0003DMT400032373	Potato	nucleus	25.34	20.24
PGSC0003DMT400039787	Potato	nucleus	22.97	19.32
PGSC0003DMT400039290	Potato	nucleus	24.49	18.45
PGSC0003DMT400052108	Potato	nucleus	20.27	16.46
PGSC0003DMT400061998	Potato	cytosol	3.21	16.24
PGSC0003DMT400018643	Potato	nucleus	15.54	15.18

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:102589259	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	UniProt:M1D0R0	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400030660	PGSC:PGSC0003DMG400030660	EnsemblPlants:PGSC0003DMT400078795	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000295827F
RefSeq:XP_006357759.1	SEG:seg	:	:	:	:

Description

Chloroplast bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030660]

Coordinates

chr2:-:42009631..42017243

Molecular Weight (calculated)

66307.3 Da

IEP (calculated)

8.693

GRAVY (calculated)

-0.757

Length

592 amino acids

Sequence
(BLAST)

001: MASAVLTGRN EPHWDKRNAY KRKYTTNPTA HSQLHSRFNP NPNPNYNLQK FSTMSHLQQV NDPLPRAAPS PAIMASNNVP FNWKPNAVDD GTDSFHRVYV
101: TFNLASYSRS ELKDLKKRLS SDLDRVQGLL DRIETQDFVS RTSFHAREVI QPPMAPPPQS ALLPNVSRQH RQPDLVGKKS KKHAGKKRPR TLDLGKDPER
201: PVVVEGDKFF VNMMKTCRQI LVKIMKKKYG RVFNAPVDVK GLNLYDYHDF IKHPMDLGTV KSRLDRNEYR TPQDFAADVR LTFTNAMTYN PKGQYVHIAA
301: EEYLGIFEEM FKPAYEKYEA EHHKVATIMQ VNHQKNLSQP APNAKRPPLP VVKKSGSVRS HSTLLNQHQS HIHSFSAPVA PFFATPASKS PLQPVVEMPR
401: SAKMPKLKAT DPNKRLMTEG ERDKLGNELQ NLPPENMGHV VQIVKRKFPN LTEDGNEVEL DLEIMDNETL WELDTYVISH KEAMSKIERP GVTENAAAVL
501: LNKSPEKAPT PEHAMPEIKK VDVVEEDVDI GEEIPGENFP PVQIDKDPSS SSGSSSGSGS SSGDSGSSSG SDSDEDSVQS PYVEAAQEAP TT

Best Arabidopsis Sequence Match ( AT5G10550.1 )
(BLAST)

001: MAPAVLANLN EPLFLGQCGA VFMRKYTNQP LSGDINNPLF NPNPNPNSIS AYGNNSSKHF DDSSAYGDYV SFDLDGYTSN QLRELKKRLN SELEEVRFLR
101: ERIESGTFVS GSVYTTQARS FAGETNDVGV KKTKTKKKKI GHGQKRSNPF ATDEPSLKRH VALDLMSEKV LKSMMTTCGQ ILVKLMKHKW SWVFLNPVDV
201: VGLGLHDYHR IVDKPMDLGT VKMNLEKGLY RSPIDFASDV RLTFTNAMSY NPKGQDVYLM AEKLLSQFDV WFNPTLKRFE AQEVKVMGSS SRPGPEDNQR
301: VWNQNNVAEN ARKGPEQISI AKKLDSVKPL LPTLPPPPVI EITRDPSPPP SPVQPPPPPS PPPQPVNQVE ASLEVRETNK GRKGKLPKPK AKDPNKREMT
401: MDEKGKLGVN LQELPPEKLG QLIQILRKRT RDLPQDGDEI ELDIEALDNE TLWELDRFVT NYRKMASKIK RQGFIQNVST PPRNMPPVTE MGSAEKRGRK
501: GGEAGEEDVD IGEDIPVEDY PSVEIERDGT AAAASGGSSS SGSFSSSGSS SSSDSESGSS SGSDSDADSV QSPFVEAKEA P

Arabidopsis Description

GTE2Transcription factor GTE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.