Factsheet for PGSC0003DMT400039290

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111090.2.1	Tomato	nucleus	95.8	96.41
VIT_17s0000g01830.t01	Wine grape	nucleus	62.85	65.43
KRH54219	Soybean	nucleus	60.05	59.9
KRH63729	Soybean	nucleus	59.67	59.9
KRH57199	Soybean	nucleus	54.58	58.05
Bra038624.1-P	Field mustard	nucleus	16.67	54.13
GSMUA_Achr8P01140_001	Banana	nucleus	50.38	52.73
GSMUA_Achr8P08920_001	Banana	nucleus	43.0	52.0
GSMUA_Achr10P...	Banana	nucleus	40.71	50.16
PGSC0003DMT400052108	Potato	nucleus	45.55	49.11
GSMUA_Achr2P20970_001	Banana	nucleus	42.88	46.81
Os02t0601800-03	Rice	nucleus	40.84	44.96
CDX84396	Canola	nucleus	34.86	44.7
TraesCS6D01G196600.3	Wheat	nucleus	38.93	43.53
GSMUA_Achr3P02660_001	Banana	plasma membrane	35.88	43.12
TraesCS7D01G309100.1	Wheat	nucleus	40.97	42.93
TraesCS6A01G214000.1	Wheat	nucleus	38.55	42.92
TraesCS7A01G312700.2	Wheat	nucleus	40.84	42.8
EES07108	Sorghum	nucleus	38.68	42.76
TraesCS3A01G087800.1	Wheat	plastid	33.08	42.62
TraesCS7B01G212400.2	Wheat	nucleus	40.46	42.4
HORVU6Hr1G054560.16	Barley	nucleus	38.42	42.24
Zm00001d035167_P001	Maize	nucleus	40.59	42.08
TraesCS6B01G244000.2	Wheat	plastid	38.55	42.08
TraesCS3D01G087900.4	Wheat	nucleus	38.3	42.04
TraesCS3B01G103200.2	Wheat	nucleus	37.91	41.68
Zm00001d017126_P001	Maize	nucleus	36.9	41.67
TraesCS3B01G141400.2	Wheat	nucleus, plastid	37.66	41.51
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	40.97	41.34
KXG24325	Sorghum	nucleus	37.02	41.1
TraesCS3A01G122200.1	Wheat	nucleus	37.15	40.95
TraesCS3D01G124100.1	Wheat	nucleus	37.15	40.95
HORVU3Hr1G022660.1	Barley	nucleus	36.13	39.89
Zm00001d049638_P009	Maize	nucleus	39.19	39.64
GSMUA_Achr3P02670_001	Banana	nucleus	34.48	38.44
HORVU3Hr1G015760.1	Barley	nucleus	26.21	37.32
AT5G63320.1	Thale cress	nucleus	48.35	35.82
CDY48139	Canola	nucleus	37.4	33.26
PGSC0003DMT400018643	Potato	nucleus	24.68	32.01
PGSC0003DMT400027387	Potato	nucleus	20.36	27.78
CDY16729	Canola	nucleus	38.93	26.8
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	10.43	26.37
PGSC0003DMT400008041	Potato	nucleus	19.72	25.75
Bra035848.1-P	Field mustard	nucleus	38.93	25.69
PGSC0003DMT400078795	Potato	nucleus	18.45	24.49
PGSC0003DMT400044321	Potato	nucleus	10.31	21.49
PGSC0003DMT400032373	Potato	nucleus	19.97	21.19
PGSC0003DMT400039787	Potato	nucleus	18.83	21.02
PGSC0003DMT400061998	Potato	cytosol	2.8	18.8

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:102591138	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009605	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0009991	GO:GO:0045892	GO:GO:0051365
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M1B827
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400015197	PGSC:PGSC0003DMG400015197
EnsemblPlants:PGSC0003DMT400039290	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF228
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002959A6F	RefSeq:XP_006351489.1	SEG:seg	:

Description

Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015197]

Coordinates

chr3:-:50628416..50635928

Molecular Weight (calculated)

87331.3 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.813

Length

786 amino acids

Sequence
(BLAST)

001: MAPTVPIDYI GQRESRKFFK KDSGDMMGKS RKGFKGYLPG MVPDYRNAVE TMAESEGFGS SGRVDTERTA SEDSCAPKRK SICLNADGHD QFGAPIQVMS
101: LSNMSCSEKK VLGIRLKNEL ELVRGLQKKI ASVGSNIGVL SPASDIQNCT NGQRRSGSEI SQRYMAEAVV PPGKKKAAPG RNGPLTKGPG AKRPKTMQQA
201: IPADTSMVMF MKQCETVLSR LMSHQHGWVF NHPVDVVKLK IPDYFTVIKQ PMDLGTIRSK LHSGEYSSPL QFADDVRLTF KNAMTYNPPG NDVHIMAQTL
301: LKFFEVRWKP IEKKIPVIQE EPLPSKSSVI IETETDTPPA MPPSKKKKIA PLENRVKPEP VKRVMSDVEK HKLTAELEDL LTELPENIID FLKEKSSNGS
401: QVSEDEIEID LDVLHDDILY ELRKLLDDYL LEKQKNQAKG EPCEMELHNE SGFSNSSMQP CKGNDPADEE VDIGGNDPPV SSFPPVEIEK DRARGSNKCS
501: SSSSSSSDSG SSSSGTDSGS SSGGESDADK DSVALTVQKA TAASGARLEQ EDELDLPETT DPLAGQTVLT SQQNSNFAEP DDHREEESAE PERQVSPEKL
601: YRAALLRGRF ADIILKAQEK SIEKGEVRDP EKLKLEREEF ERRRREEKAR LQAEAKAAEE ARKRAEAEAA AEAKRKRELE REAARQALQK MEKTVEINEN
701: SQFMEDLELF RAAPDEQLES FIEETSPGHS ENVLGSFKFK ATSNPLEQLG LYMKEEDEDE DEEEEEEAEP QSIPDVSNDP EEGEID

Best Arabidopsis Sequence Match ( AT5G63320.1 )
(BLAST)

0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D

Arabidopsis Description

GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.