Factsheet for TraesCS3A01G122200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G124100.1	Wheat	nucleus	97.62	97.62
TraesCS3B01G141400.2	Wheat	nucleus, plastid	95.93	95.93
HORVU3Hr1G022660.1	Barley	nucleus	91.87	91.99
TraesCS3A01G087800.1	Wheat	plastid	72.79	85.08
TraesCS6A01G214000.1	Wheat	nucleus	83.31	84.14
Os02t0601800-03	Rice	nucleus	77.7	77.59
EES07108	Sorghum	nucleus	73.49	73.7
Zm00001d017126_P001	Maize	nucleus	71.53	73.28
GSMUA_Achr8P01140_001	Banana	nucleus	44.18	41.94
VIT_17s0000g01830.t01	Wine grape	nucleus	44.04	41.59
GSMUA_Achr8P08920_001	Banana	nucleus	37.31	40.92
Bra025262.1-P	Field mustard	nucleus	31.0	40.85
VIT_14s0171g00380.t01	Wine grape	nucleus	42.22	40.84
Bra038624.1-P	Field mustard	nucleus	13.46	39.67
KRH07021	Soybean	nucleus	41.37	39.65
KRH63729	Soybean	nucleus	43.48	39.59
KRG94435	Soybean	nucleus	40.81	39.22
CDY20057	Canola	nucleus	35.2	38.91
Bra039088.1-P	Field mustard	nucleus	35.34	38.71
KRH57199	Soybean	nucleus	39.97	38.57
GSMUA_Achr2P20970_001	Banana	nucleus	38.85	38.47
KRH54219	Soybean	nucleus	42.36	38.32
GSMUA_Achr10P...	Banana	nucleus	33.8	37.77
Solyc03g111090.2.1	Tomato	nucleus	41.23	37.64
AT5G14270.2	Thale cress	nucleus	36.33	37.59
AT3G01770.1	Thale cress	nucleus	32.54	37.42
PGSC0003DMT400039290	Potato	nucleus	40.95	37.15
PGSC0003DMT400052108	Potato	nucleus	37.87	37.04
GSMUA_Achr3P02660_001	Banana	plasma membrane	33.66	36.7
Solyc02g093880.2.1	Tomato	nucleus	36.75	36.14
CDY13699	Canola	nucleus	23.0	35.89
TraesCS7A01G312700.2	Wheat	nucleus	36.75	34.93
KRH07022	Soybean	nucleus	37.59	34.1
GSMUA_Achr3P02670_001	Banana	nucleus	33.24	33.62
CDX83673	Canola	nucleus	23.14	33.13
AT3G27260.3	Thale cress	nucleus	37.31	32.36
CDX84396	Canola	nucleus	27.21	31.65
TraesCS7A01G539800.2	Wheat	nucleus, plastid	21.74	28.23
TraesCS3A01G234100.1	Wheat	cytosol, nucleus, plastid	8.13	26.98
TraesCS3A01G234000.1	Wheat	cytosol	8.27	26.82
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	17.39	26.55
TraesCS3A01G234600.1	Wheat	cytosol, nucleus, plastid	7.99	26.51
TraesCS3A01G234500.1	Wheat	cytosol	8.13	26.36
AT5G63320.1	Thale cress	nucleus	37.31	25.07
CDY48139	Canola	nucleus	29.17	23.53
TraesCS3A01G140500.1	Wheat	nucleus, plastid	16.27	22.75
TraesCS4A01G377900.2	Wheat	cytosol	9.82	19.94
TraesCS7A01G080900.1	Wheat	nucleus	9.82	19.94
TraesCS1A01G367300.1	Wheat	cytosol	9.54	19.48
CDY16729	Canola	nucleus	30.43	19.0
Bra035848.1-P	Field mustard	nucleus	30.43	18.22

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS3A01G122200	EnsemblPlants:TraesCS3A01G122200.1	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr3A:-:96241475..96250760

Molecular Weight (calculated)

78580.6 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.701

Length

713 amino acids

Sequence
(BLAST)

001: MPTTSISKPK QVCASLAPGN MTPTVRMECG PQMQAKRSYD EIAYRGTGYA ETVGESGSPV RAGPEGFSAS KRKCISLNSD GFDVKREIFV PSKMSSSERR
101: YLRKRFRAEL DSVRELLKKP EFLSVMPVSK APALSSSAAP RAKKVQRGSH VVRGAKGRFL PTKPRPETST VLPEATILKQ CEAILKKLMT QKCSHIFNDP
201: VDVEKLNLPD YNDIIKHPMD LGTIKKKLDS GSYASPSDFA ADVRLTFNNA ITYNPRGHVV HDLAIQLNKM FESRWRTVEK KLATAATKPH VEVDKADSKR
301: RKTPPVERSN LSIDRVRPTE IVKPKMTKEE RETLGDCLSS LAEGPEELPG HIIDLLQQCM ESNTEQHGDG EIEIDIHALS DDVLFELKKH VDTYLQERDH
401: QQTKSQPSEN EAVNVSCLSH SSTNPCKGAE PVEEDVDICG NASPILIEKD PQIITDKCGS PSSSSSDSGS SSSDSDSGSD IESEPEKVVS PAKLVKGPEQ
501: PAEQVKSDDV ISPVDANQTA ADVELREQDN ESKAAPEGEN AKPDRQLSPD KLLRAAVLRG RYADVIVKAR GILSQGGDKQ EELEKLQKEE KERLLAEGNA
601: ALEARRAEAE AESKRKLDLE REKARQALQE MERTVEINDI VHPKDLEMLG TVTTEHIMSS VDETSPEHSL DGLPSFLPGS GSMLEKLGLF MKVDEEEEEE
701: EPCSKDAEVG EIN

Best Arabidopsis Sequence Match ( AT3G27260.1 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPKPDE TSTERPLDAL GSFKLGECNP LEQLGLYMKQ DDGEEEEPEA PVVPKPNETS LERPVDAFGS FNLKGSNPLE QLGLYMKQDD DEEEPEAPAV
801: PNLANDVEEG EID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.