CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63729	Soybean	nucleus	91.88	92.46
KRH57199	Soybean	nucleus	64.97	69.28
VIT_17s0000g01830.t01	Wine grape	nucleus	63.45	66.23
PGSC0003DMT400039290	Potato	nucleus	59.9	60.05
Solyc03g111090.2.1	Tomato	nucleus	59.39	59.92
GSMUA_Achr8P08920_001	Banana	nucleus	44.42	53.85
GSMUA_Achr8P01140_001	Banana	nucleus	51.27	53.79
GSMUA_Achr10P...	Banana	nucleus	42.89	52.98
KRH07021	Soybean	nucleus	50.0	52.96
KRG94435	Soybean	nucleus	49.62	52.7
Bra038624.1-P	Field mustard	nucleus	16.12	52.48
GSMUA_Achr2P20970_001	Banana	nucleus	44.8	49.03
KRH07022	Soybean	nucleus	47.72	47.84
TraesCS3A01G087800.1	Wheat	plastid	34.9	45.08
Zm00001d035167_P001	Maize	nucleus	43.27	44.99
Os02t0601800-03	Rice	nucleus	40.61	44.82
TraesCS7D01G309100.1	Wheat	nucleus	42.39	44.53
TraesCS6D01G196600.3	Wheat	nucleus	39.72	44.52
EES07108	Sorghum	nucleus	40.1	44.44
TraesCS7A01G312700.2	Wheat	nucleus	42.13	44.27
CDX84396	Canola	nucleus	34.39	44.21
TraesCS6A01G214000.1	Wheat	nucleus	39.59	44.19
TraesCS7B01G212400.2	Wheat	nucleus	42.01	44.13
HORVU6Hr1G054560.16	Barley	nucleus	39.97	44.06
TraesCS3D01G087900.4	Wheat	nucleus	39.85	43.85
TraesCS3B01G103200.2	Wheat	nucleus	39.72	43.78
Zm00001d017126_P001	Maize	nucleus	38.45	43.53
KXG24325	Sorghum	nucleus	39.09	43.5
TraesCS6B01G244000.2	Wheat	plastid	39.59	43.33
TraesCS3B01G141400.2	Wheat	nucleus, plastid	39.09	43.2
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	42.64	43.13
GSMUA_Achr3P02660_001	Banana	plasma membrane	35.66	42.97
TraesCS3D01G124100.1	Wheat	nucleus	38.71	42.78
TraesCS3A01G122200.1	Wheat	nucleus	38.32	42.36
Zm00001d049638_P009	Maize	nucleus	41.5	42.08
HORVU3Hr1G022660.1	Barley	nucleus	37.56	41.57
HORVU3Hr1G015760.1	Barley	nucleus	27.66	39.49
GSMUA_Achr3P02670_001	Banana	nucleus	34.64	38.72
AT5G63320.1	Thale cress	nucleus	47.72	35.44
CDY48139	Canola	nucleus	37.31	33.26
KRH11112	Soybean	nucleus	23.6	32.92
KRH21136	Soybean	nucleus	23.35	32.51
KRH10648	Soybean	nucleus	20.69	30.41
KRH10646	Soybean	nucleus	20.18	30.06
KRH21702	Soybean	nucleus	19.8	29.38
KRH22304	Soybean	nucleus	22.72	27.97
KRH27020	Soybean	nucleus	22.84	27.86
CDY16729	Canola	nucleus	38.96	26.88
Bra035848.1-P	Field mustard	nucleus	38.96	25.78
KRH45305	Soybean	nucleus	10.66	22.89
KRH04734	Soybean	nucleus	10.28	21.37
KRH12139	Soybean	nucleus	9.26	20.92
KRH25703	Soybean	nucleus	22.72	20.48
KRH37141	Soybean	cytosol, nucleus	6.98	20.15
KRH55813	Soybean	nucleus	22.21	17.77

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100782458	MapMan:15.5.54	EMBL:ACUP02003508	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G172300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K7KVK4
EnsemblPlants:KRH54219	ProteinID:KRH54219	ProteinID:KRH54219.1	ProteinID:KRH54220.1	ProteinID:KRH54221.1	ProteinID:KRH54222.1
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00023C3A59
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:14429368..14434723

Molecular Weight (calculated)

87498.0 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.836

Length

788 amino acids

Sequence
(BLAST)

001: MAPTLPIEFA GQKESRKYSH SQNMGKSRKY SKGYATGFVP DFRHAVETID ESEGLGSLGR VDMELTALAD SCAPKRKRPG LNTCGGDYAG SFNVPFRHFS
101: LSAMSGFERK DLKVRLTWEL EQVREFQKKI DGMNSSVVGG LSLFSDIRGC SAGQKRPKLE SQHSTMEVSV PPGKKRPVPG HNGPKSKKSM SERLEHAKPA
201: APVTSYAMLM KSCENVLNRL MSHQFAWVFN DPVDVVKLNI PDYFTVIKHP MDLGTVKKRI TSGEYSNPMD FAADVRLTFD NAMFYNPAGN DVHIMAETLS
301: KFFETRWKAI EKKIPVIDCV ASEPSRPTRV ETEISDRVPP TKKKKITPND SSVKPEPVKR IVTVEEKQKL SLELETMIGE LPDSIVDFLR EQSYNEGQTN
401: DDEIEIDIDT LSDDTLFKLR KLLDDYMLEK QKSQAKAGQC EMELLNESGF SNSSMQPCKD AGNEQVEEDV DIVGGNDPPI SNYPSLEIEN DVTKRNSKCS
501: SSSSSSSESG SSSSDSDSVS SSGSELDMAK TSEPLSATKE NIGFGLTSDQ NKGDPGNSET GKDSTNVGGQ VEESSQSRPV ATEPESHQEG ESAASKRQVS
601: PEKLYRAALL RSRFADTILK AQEKALEKDE KRDPEKLRIE REDLERRQKE EKARLQAEAK AAEEAQRKAE AEAAAEAKRK RELEREAARQ ALQKMEKTVD
701: INENSQFLED LEMLSAVHDE HLPSFKEETS TDQPQDGLGG IKLQGNPLEQ LGLYMKDEDE EEDEEEEDEL PPSGAVGPSN DVEEGEID

Best Arabidopsis Sequence Match ( AT5G63320.1 )
(BLAST)

0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D

Arabidopsis Description

GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.