Factsheet for Solyc03g111090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039290	Potato	nucleus	96.41	95.8
VIT_17s0000g01830.t01	Wine grape	nucleus	63.0	65.17
KRH63729	Soybean	nucleus	59.67	59.51
KRH54219	Soybean	nucleus	59.92	59.39
KRH57199	Soybean	nucleus	54.55	57.65
Bra038624.1-P	Field mustard	nucleus	17.29	55.79
GSMUA_Achr8P01140_001	Banana	nucleus	50.45	52.46
GSMUA_Achr8P08920_001	Banana	nucleus	43.15	51.85
GSMUA_Achr10P...	Banana	nucleus	41.1	50.31
Solyc02g093880.2.1	Tomato	nucleus	45.71	49.24
GSMUA_Achr2P20970_001	Banana	nucleus	43.28	46.94
CDX84396	Canola	nucleus	35.6	45.35
Os02t0601800-03	Rice	nucleus	41.23	45.1
TraesCS6D01G196600.3	Wheat	nucleus	39.31	43.67
EES07108	Sorghum	nucleus	39.44	43.32
TraesCS3A01G087800.1	Wheat	plastid	33.8	43.28
TraesCS6A01G214000.1	Wheat	nucleus	39.05	43.2
TraesCS7A01G312700.2	Wheat	nucleus	41.49	43.2
TraesCS7D01G309100.1	Wheat	nucleus	41.49	43.2
TraesCS7B01G212400.2	Wheat	nucleus	40.97	42.67
GSMUA_Achr3P02660_001	Banana	plasma membrane	35.72	42.66
TraesCS3D01G087900.4	Wheat	nucleus	39.05	42.6
HORVU6Hr1G054560.16	Barley	nucleus	38.92	42.52
Zm00001d035167_P001	Maize	nucleus	41.23	42.48
TraesCS6B01G244000.2	Wheat	plastid	39.05	42.36
TraesCS3B01G103200.2	Wheat	nucleus	38.67	42.24
Zm00001d017126_P001	Maize	nucleus	37.26	41.81
KXG24325	Sorghum	nucleus	37.9	41.81
TraesCS3B01G141400.2	Wheat	nucleus, plastid	38.16	41.8
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	41.49	41.59
TraesCS3D01G124100.1	Wheat	nucleus	37.77	41.37
TraesCS3A01G122200.1	Wheat	nucleus	37.64	41.23
HORVU3Hr1G022660.1	Barley	nucleus	36.62	40.17
Zm00001d049638_P009	Maize	nucleus	39.69	39.9
GSMUA_Achr3P02670_001	Banana	nucleus	34.7	38.44
HORVU3Hr1G015760.1	Barley	nucleus	26.5	37.5
AT5G63320.1	Thale cress	nucleus	48.91	36.0
CDY48139	Canola	nucleus	37.9	33.48
Solyc02g071510.2.1	Tomato	nucleus	24.84	33.05
CDY16729	Canola	nucleus	39.82	27.23
Bra035848.1-P	Field mustard	nucleus	39.82	26.11
Solyc01g106280.2.1	Tomato	nucleus	19.97	25.91
Solyc02g091660.2.1	Tomato	nucleus	17.67	25.79
Solyc10g008070.2.1	Tomato	nucleus	11.01	23.76
Solyc09g015660.2.1	Tomato	cytosol	10.37	22.44
Solyc09g090370.2.1	Tomato	nucleus	9.86	22.25
Solyc12g014170.1.1	Tomato	nucleus	19.33	21.54
Solyc07g062660.2.1	Tomato	nucleus	19.33	20.08

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009605	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0009991	GO:GO:0045892	GO:GO:0051365	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K4BJX2	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	EnsemblPlantsGene:Solyc03g111090.2	EnsemblPlants:Solyc03g111090.2.1
UniParc:UPI0002768D0A	SEG:seg	:	:	:	:

Description

Transcription factor GTE10 [Source:Projected from Arabidopsis thaliana (AT5G63320) UniProtKB/Swiss-Prot;Acc:Q9FGW9]

Coordinates

chr3:-:61746820..61753202

Molecular Weight (calculated)

86850.8 Da

IEP (calculated)

4.759

GRAVY (calculated)

-0.805

Length

781 amino acids

Sequence
(BLAST)

001: MAPTVPIDYV GQRESRKFFK KDSVDIMGKS RKGFKGYLPG IVPDYRNAVE TMAESEGFGS SGRIDTERTA SEDSCAPKRK SICLNADGHD QFGAPIQSMS
101: LSSMSSSEKK VLGIRLKNEL ELVRGLQKKI ASVGSNIGVL SPASDLQNCT NGQRRSGSEI SQRYMAEAVI PPGKKKPAPV RNGPLTKGPG AKRPKTMQQA
201: IPSDTSMVMI MKQCETVLSR LMSHQHGWVF NHPVDVVKLK IPDYFTVIKQ PMDLGTIRSK LHSGEYSSPL QFAADVRLTF KNAMTYNPPG NDVHIMAQTL
301: SKFFEVRWKP IEKKIPVIEE EPLPSKSSVI IETETDTPPA LPPSKKKKIA PLENRVKPEP VKRVMSDVEK HKLTAELEDL LTELPENIID FLKEKSSNGN
401: QVSEDEIEID LDVLHDDILY ELRKLLDDYL LEKQKNQAKG EPCEMELHNE SGFSNSSMQP CKGNDPADEE VDIGGNDPPV SSFPPVEIEK DRARRSNKCS
501: SSSSSSSGSG SSSSGTDSGS SSGGESDADK DSVVQKATAA SGARLEQEDE LDLPETTDPL AGQTVLTSQQ NSNFAELDDH REEESAEPER QVSPEKLYRA
601: ALLRGRFADI ILKAQEKSIE KGEVRDPEKL KLEREEFERR RREEKARLQA EAKAAEEARK RAEAEAAAEA KRKRELEREA ARQALQKMEK TVEINENSRF
701: MEDLELFRAA PDEQLESFID ETSPGHSENI LGSFKFKASS NPLEQLGLYM KEEDEDEEEE EEAEPHSIPD ISNDPEEGEI D

Best Arabidopsis Sequence Match ( AT5G63320.1 )
(BLAST)

0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D

Arabidopsis Description

GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.