Factsheet for VIT_17s0000g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63729	Soybean	nucleus	66.49	64.11
KRH54219	Soybean	nucleus	66.23	63.45
KRH57199	Soybean	nucleus	61.72	63.06
Solyc03g111090.2.1	Tomato	nucleus	65.17	63.0
PGSC0003DMT400039290	Potato	nucleus	65.43	62.85
VIT_14s0171g00380.t01	Wine grape	nucleus	59.87	61.33
GSMUA_Achr8P01140_001	Banana	nucleus	55.1	55.39
GSMUA_Achr8P08920_001	Banana	nucleus	47.02	54.62
Bra038624.1-P	Field mustard	nucleus	17.22	53.72
GSMUA_Achr10P...	Banana	nucleus	44.24	52.35
GSMUA_Achr2P20970_001	Banana	nucleus	48.48	50.83
CDX84396	Canola	nucleus	38.54	47.47
Os02t0601800-03	Rice	nucleus	44.77	47.34
TraesCS6D01G196600.3	Wheat	nucleus	43.71	46.94
TraesCS3A01G087800.1	Wheat	plastid	37.62	46.56
Zm00001d017126_P001	Maize	nucleus	42.91	46.55
EES07108	Sorghum	nucleus	43.71	46.41
TraesCS6A01G214000.1	Wheat	nucleus	43.18	46.18
TraesCS7D01G309100.1	Wheat	nucleus	45.7	46.0
TraesCS7A01G312700.2	Wheat	nucleus	45.43	45.73
Zm00001d035167_P001	Maize	nucleus	45.83	45.65
HORVU6Hr1G054560.16	Barley	nucleus	43.18	45.59
TraesCS3D01G087900.4	Wheat	nucleus	43.18	45.53
TraesCS7B01G212400.2	Wheat	nucleus	45.17	45.47
TraesCS6B01G244000.2	Wheat	plastid	43.31	45.42
TraesCS3B01G103200.2	Wheat	nucleus	42.78	45.17
TraesCS3B01G141400.2	Wheat	nucleus, plastid	42.25	44.74
TraesCS3D01G124100.1	Wheat	nucleus	41.72	44.18
TraesCS3A01G122200.1	Wheat	nucleus	41.59	44.04
GSMUA_Achr3P02660_001	Banana	plasma membrane	38.15	44.04
HORVU3Hr1G022660.1	Barley	nucleus	41.32	43.82
KXG24325	Sorghum	nucleus	41.06	43.79
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	45.03	43.65
Zm00001d049638_P009	Maize	nucleus	43.84	42.6
GSMUA_Achr3P02670_001	Banana	nucleus	38.94	41.7
HORVU3Hr1G015760.1	Barley	nucleus	30.46	41.67
AT5G63320.1	Thale cress	nucleus	53.38	37.98
CDY48139	Canola	nucleus	42.25	36.09
VIT_10s0003g02240.t01	Wine grape	nucleus	25.56	33.68
VIT_03s0097g00570.t01	Wine grape	nucleus	23.31	31.88
CDY16729	Canola	nucleus	42.38	28.02
VIT_19s0014g01650.t01	Wine grape	nucleus	21.72	27.47
Bra035848.1-P	Field mustard	nucleus	42.38	26.87
VIT_12s0028g02510.t01	Wine grape	nucleus	22.12	25.54
VIT_13s0019g03950.t01	Wine grape	nucleus	11.92	23.32

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100249253	wikigene:100249253	MapMan:15.5.54	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ProteinID:CCB43313	ProteinID:CCB43313.1	ncoils:Coil	UniProt:F6GSS8	EMBL:FN594950
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009605	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0009991	GO:GO:0045892	GO:GO:0051365	InterPro:GTE_bromo
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	EntrezGene:LOC100249253	wikigene:LOC100249253
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	TIGR:TC53407
TIGR:TC70597	UniParc:UPI0002109782	ArrayExpress:VIT_17s0000g01830	EnsemblPlantsGene:VIT_17s0000g01830	EnsemblPlants:VIT_17s0000g01830.t01	unigene:Vvi.16006
RefSeq:XP_002279401	RefSeq:XP_002279401.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:1369474..1381475

Molecular Weight (calculated)

83977.7 Da

IEP (calculated)

5.022

GRAVY (calculated)

-0.836

Length

755 amino acids

Sequence
(BLAST)

001: MAKTRKVSKG HSSSGFVPDY RHAVETMGES EGFGSSGRVD TEMTASEDSC VPKRKCISLN VDGYDSFCVP VQVLSLSKMS RAERRDLERR LKMELQQVRA
101: FQKKIASLCS NLVPLSPTSD IRSCSNGQKR PPKDKIQKSS EASTHQRKKR PPPPGRNVPK MKRGLSGRFE SVKQAAPPGT SNSMLMKQCE TLLSRLMTHQ
201: FGWIFNNPVD VVELKIPDYF TVIKHPMDLG TIKSKMASGE YLSPFDFAAD VRLTFSNAMT YNPRGNDVHF MAETLNKFFE MRWKPIEKKL PVTIDVESLP
301: SRSDAHLEIE TADRMPPSKK KKVAPTDHKI KMEPNKRIMT KEERHNLGTE LETLLGELPD DIVDFLKEQS FNENQASEDE IEIDIDALSD DTLFTLRKLL
401: DGYLLEKQKN LTKTEPCEME LRNESGFSNS SMQPCKGNDH LDEDVDIGGN DPPTSSYPPI EIEKDAAHRN SRCSSSSTSS SDSGSSSSDS DSGSSSGGES
501: DGAKASVPVT STKETVASGA DLDPKKSDLG EDIGNEALNI PCNVDPNLES KPISAEADGH QEGESAPSER QVSPEKLYRA ALLRSRFADT ILKAREKTLE
601: KGEKGDPEKL RLEREELERR QKEEKARLQA EAKAAEEARK KAEAEAAAEA KRKRELDREA ARQALQQMQK TVDINENCLF LKDLEMLRAA PEPLPSLDER
701: SPDQSPNCLG SFKLQGSNPL EQLGLYMKMD DEEEEEVEPQ CIPGPGNDVE EGEID

Best Arabidopsis Sequence Match ( AT5G63320.1 )
(BLAST)

0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D

Arabidopsis Description

GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.