Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P01140_001 | Banana | nucleus | 77.54 | 67.11 |
| GSMUA_Achr10P... | Banana | nucleus | 53.38 | 54.39 |
| VIT_17s0000g01830.t01 | Wine grape | nucleus | 54.62 | 47.02 |
| KRH63729 | Soybean | nucleus | 54.0 | 44.83 |
| GSMUA_Achr2P20970_001 | Banana | nucleus | 49.54 | 44.72 |
| KRH54219 | Soybean | nucleus | 53.85 | 44.42 |
| Bra038624.1-P | Field mustard | nucleus | 16.31 | 43.8 |
| VIT_14s0171g00380.t01 | Wine grape | nucleus | 49.23 | 43.42 |
| KRH57199 | Soybean | nucleus | 49.23 | 43.3 |
| Solyc03g111090.2.1 | Tomato | nucleus | 51.85 | 43.15 |
| PGSC0003DMT400039290 | Potato | nucleus | 52.0 | 43.0 |
| KRG94435 | Soybean | nucleus | 46.46 | 40.7 |
| KRH07021 | Soybean | nucleus | 46.46 | 40.59 |
| TraesCS7D01G309100.1 | Wheat | nucleus | 46.0 | 39.87 |
| HORVU3Hr1G015760.1 | Barley | nucleus | 33.69 | 39.67 |
| TraesCS7A01G312700.2 | Wheat | nucleus | 45.69 | 39.6 |
| TraesCS7B01G212400.2 | Wheat | nucleus | 45.54 | 39.47 |
| Bra025262.1-P | Field mustard | nucleus | 32.62 | 39.19 |
| TraesCS3D01G087900.4 | Wheat | nucleus | 43.08 | 39.11 |
| Os02t0601800-03 | Rice | nucleus | 42.92 | 39.08 |
| TraesCS6D01G196600.3 | Wheat | nucleus | 42.15 | 38.98 |
| TraesCS6A01G214000.1 | Wheat | nucleus | 42.31 | 38.95 |
| Solyc02g093880.2.1 | Tomato | nucleus | 43.38 | 38.9 |
| TraesCS3A01G087800.1 | Wheat | plastid | 36.46 | 38.85 |
| HORVU6Hr1G054560.16 | Barley | nucleus | 42.46 | 38.6 |
| Zm00001d017126_P001 | Maize | nucleus | 41.08 | 38.36 |
| PGSC0003DMT400052108 | Potato | nucleus | 42.92 | 38.27 |
| Zm00001d035167_P001 | Maize | nucleus | 44.46 | 38.13 |
| TraesCS3B01G103200.2 | Wheat | nucleus | 41.85 | 38.04 |
| EES07108 | Sorghum | nucleus | 41.54 | 37.97 |
| TraesCS6B01G244000.2 | Wheat | plastid | 42.0 | 37.92 |
| AT5G14270.2 | Thale cress | nucleus | 40.15 | 37.88 |
| HORVU7Hr1G074620.7 | Barley | cytosol, mitochondrion, nucleus | 45.23 | 37.74 |
| TraesCS3B01G141400.2 | Wheat | nucleus, plastid | 41.23 | 37.59 |
| GSMUA_Achr3P02660_001 | Banana | plasma membrane | 37.54 | 37.31 |
| TraesCS3A01G122200.1 | Wheat | nucleus | 40.92 | 37.31 |
| TraesCS3D01G124100.1 | Wheat | nucleus | 40.92 | 37.31 |
| AT3G01770.1 | Thale cress | nucleus | 35.54 | 37.26 |
| KRH07022 | Soybean | nucleus | 44.92 | 37.15 |
| Bra039088.1-P | Field mustard | nucleus | 37.08 | 37.02 |
| KXG24325 | Sorghum | nucleus | 40.15 | 36.86 |
| HORVU3Hr1G022660.1 | Barley | nucleus | 40.15 | 36.66 |
| CDY20057 | Canola | nucleus | 36.15 | 36.43 |
| Zm00001d049638_P009 | Maize | nucleus | 43.38 | 36.29 |
| GSMUA_Achr3P02670_001 | Banana | nucleus | 38.46 | 35.46 |
| CDY13699 | Canola | nucleus | 24.0 | 34.14 |
| CDX84396 | Canola | nucleus | 31.23 | 33.12 |
| AT3G27260.3 | Thale cress | nucleus | 40.15 | 31.75 |
| CDX83673 | Canola | nucleus | 24.31 | 31.73 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 19.85 | 28.86 |
| AT5G63320.1 | Thale cress | nucleus | 44.62 | 27.33 |
| GSMUA_Achr1P15650_001 | Banana | nucleus | 20.0 | 26.42 |
| GSMUA_Achr3P00480_001 | Banana | nucleus | 21.08 | 26.25 |
| CDY48139 | Canola | nucleus | 34.77 | 25.57 |
| GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 20.15 | 25.49 |
| GSMUA_Achr1P11660_001 | Banana | nucleus | 19.54 | 24.76 |
| GSMUA_Achr11P... | Banana | nucleus | 15.23 | 23.4 |
| GSMUA_Achr4P27780_001 | Banana | nucleus | 22.0 | 21.22 |
| CDY16729 | Canola | nucleus | 36.15 | 20.58 |
| GSMUA_Achr8P29340_001 | Banana | nucleus | 12.0 | 19.95 |
| Bra035848.1-P | Field mustard | nucleus | 36.15 | 19.73 |
| GSMUA_Achr8P34430_001 | Banana | nucleus | 10.92 | 16.51 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr8G08920_001 | EnsemblPlants:GSMUA_Achr8P08920_001 | EnsemblPlants:GSMUA_Achr8T08920_001 |
| InterPro:GTE_bromo | InterPro:IPR001487 | InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 | UniProt:M0TNU5 |
| InterPro:NET_dom | InterPro:NET_sf | PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 | PFscan:PS50014 |
| PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF228 | SMART:SM00297 | SUPFAM:SSF47370 | UniParc:UPI000295E275 |
| SEG:seg | : | : | : | : | : |
Description
Putative bromodomain domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G08920_001]
Coordinates
chr8:+:6086414..6092296
Molecular Weight (calculated)
73598.0 Da
IEP (calculated)
6.973
GRAVY (calculated)
-0.798
Length
650 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKAQKLSKG PGFVPGYQHV VETTAESEGF GSCGRADSED SSAPKRKCIS LNVDRCGKFD VPFELFSLSK MSKCEKEELE TRFKRDLDQV RMFQKKMFSR
101: ITTSADGVAL SSSSDGYVKK QYAMGQNGSN FKCMNNGNLE MSKRAPDPDR LGNSYSLLMK QCETLLKRLM NHQYGWVFNT PVDPVKLNIP DYFQVIKYPM
201: DFGTIKTRIQ LGRYSNPCDF VSDVRLTFTN AKTYNPPKND VHIMADAMSK FFETRWKPIE KKLVAANAAV KREAETPKPI LQPNKRKTPS FNHDIILPEV
301: VRSKMTVEEK ESLSRRLESL GDMPEHVIDF LRRNIAASQT SADEVEIDLH AMSDDLLFEL RKLLDDYMVR ERLKDQTKSE PCEIEIINES GLSNSSMHPC
401: KGNEPIEEDV DIVGNDPPVS RYPPVVIEKD TMLRSGKRCR SSSSSSDSGS SSSDSDSGSS SESESDVKVA SPMKDMKKNM LAGQALDQER SDLSNPHDEN
501: RTSDETNQEE HVAQPKSESV DIERNREDLL RDNAPSERRF SPEKLYRAAL LRSRFADTIL KAREKTLDQG EKRDPEKLRR ERETLERRKR EEKARLQAEA
601: KAAEEAQRLA EAEAAAEAKR KRELEREAAR QALLQASISL GIWLLVCPCV
101: ITTSADGVAL SSSSDGYVKK QYAMGQNGSN FKCMNNGNLE MSKRAPDPDR LGNSYSLLMK QCETLLKRLM NHQYGWVFNT PVDPVKLNIP DYFQVIKYPM
201: DFGTIKTRIQ LGRYSNPCDF VSDVRLTFTN AKTYNPPKND VHIMADAMSK FFETRWKPIE KKLVAANAAV KREAETPKPI LQPNKRKTPS FNHDIILPEV
301: VRSKMTVEEK ESLSRRLESL GDMPEHVIDF LRRNIAASQT SADEVEIDLH AMSDDLLFEL RKLLDDYMVR ERLKDQTKSE PCEIEIINES GLSNSSMHPC
401: KGNEPIEEDV DIVGNDPPVS RYPPVVIEKD TMLRSGKRCR SSSSSSDSGS SSSDSDSGSS SESESDVKVA SPMKDMKKNM LAGQALDQER SDLSNPHDEN
501: RTSDETNQEE HVAQPKSESV DIERNREDLL RDNAPSERRF SPEKLYRAAL LRSRFADTIL KAREKTLDQG EKRDPEKLRR ERETLERRKR EEKARLQAEA
601: KAAEEAQRLA EAEAAAEAKR KRELEREAAR QALLQASISL GIWLLVCPCV
0001: MGKARKHSRG RPSGFVPDYM QAVEPDEFVY SERMNSEASP PLKRRRFGLN GDNNGVSKEV LSLSKMSRSE RKNLVHKLKM ELQQVRDLSK KIASFSSDTV
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D
0101: LLSPYNDHSC SDGPRRPPPE NFATFVGSQG KKRPPVRSDK QRNKKGPSRL NVPTSYTVAS VMKECETLLN RLWSHKSGWP FRTPVDPVML NIPDYFNVIK
0201: HPMDLGTIRS RLCKGEYSSP LDFAADVRLT FSNSIAYNPP GNQFHTMAQG ISKYFESGWK SIEKKIPMSK PPVIPLTSSA SLESEIPFEV APMRKKEAAM
0301: NDNKLRVEPA KLVMTDGEKK KLGQDLMALE EDFPQKIADL LREQSGSDGQ SGEGEIEIDI EALSDEILFM VRKLLDDYLR EKKKSMEKSE PCEMEIVHDS
0401: GFSNSPLQPS KGDLQIDEDV DIVGGNDPSV SSHPPLKIEK DAACRNNESS SSSSSSSESG SSSSDSDSCS SSGSETDSIK ASKPTSREEK KQPGVGIDKK
0501: EDDSNSEKIV VNDSLNELDQ LEHTVGEKST TMDAVVLVPD EETAPPERQI SPDSPDKRYR AAFLKNRFAD TIMKAREKAF TKGEKGDPEK LRIEREEFEK
0601: RLREEKERLQ AEAKAAEEAR RKAKAEAAEK ARREREQERE AARQALQKME KTVEINEGIR FMEDLQMLRA TGTEGDQLPT SMEVMSPKFS EDMLGLGSFK
0701: MESNSNPLEH LGLYMKMDED EDEEEDPPHF SQRKVEDNPF DRSEKQEHSP HRVEGEDQLV SGNEEPVSQE AHDNGDQEDG KPINPNEIER QLENMPEQES
0801: GVGDKEEQET EVVDMRKQEN EVVDMGVEEV HPLDRSEGRT LSPHRKERED PRASGNEESV SEKAQDYENQ RDEKINQSER EEQLENVLEQ ESSRDDDTGE
0901: QETEVVGVGK ELSLDKSEGQ TLSPHREEGE NQLDCGNEEL VSQKTQDNGN QEDEKSINKI EGEEQLANVP EQESRVTEKE EQETGVVDLG EQKSEVVEKG
1001: VEENEAVDNG EGVQGTEVSD KGGNETVVDG NGKVETEVVD KAGQKTDLVD QGEEDIDVEI D
Arabidopsis Description
GTE10NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.