CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03892
KRH37914
KRH57174
KRH63672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	KRH03892	AT3G48360.1	15316289
AT3G01770.1	KRH37914	AT3G48360.1	15316289
AT3G01770.1	KRH57174	AT3G48360.1	15316289
AT3G01770.1	KRH63672	AT3G48360.1	15316289
AT3G01770.1	KRH03892	AT5G63160.1	15316289
AT3G01770.1	KRH37914	AT5G63160.1	15316289
AT3G01770.1	KRH57174	AT5G63160.1	15316289
AT3G01770.1	KRH63672	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07021	Soybean	nucleus	72.14	76.21
KRG94435	Soybean	nucleus	69.85	73.99
VIT_14s0171g00380.t01	Wine grape	nucleus	57.63	61.47
Bra025262.1-P	Field mustard	nucleus	38.68	56.19
PGSC0003DMT400052108	Potato	nucleus	50.76	54.73
CDY20057	Canola	nucleus	44.91	54.73
Bra039088.1-P	Field mustard	nucleus	45.17	54.53
CDY13699	Canola	nucleus	31.55	54.27
Solyc02g093880.2.1	Tomato	nucleus	49.62	53.79
CDX83673	Canola	nucleus	31.93	50.4
AT5G14270.2	Thale cress	nucleus	43.77	49.93
KRH57199	Soybean	nucleus	46.18	49.12
KRH63729	Soybean	nucleus	48.6	48.79
AT3G01770.1	Thale cress	nucleus	38.42	48.71
KRH54219	Soybean	nucleus	47.84	47.72
GSMUA_Achr8P01140_001	Banana	nucleus	44.91	47.0
GSMUA_Achr8P08920_001	Banana	nucleus	37.15	44.92
GSMUA_Achr2P20970_001	Banana	nucleus	40.46	44.17
GSMUA_Achr10P...	Banana	nucleus	35.37	43.57
TraesCS7D01G309100.1	Wheat	nucleus	39.06	40.93
TraesCS7A01G312700.2	Wheat	nucleus	39.06	40.93
TraesCS7B01G212400.2	Wheat	nucleus	38.93	40.8
Os02t0601800-03	Rice	nucleus	36.77	40.48
TraesCS6D01G196600.3	Wheat	nucleus	36.13	40.4
GSMUA_Achr3P02660_001	Banana	plasma membrane	33.46	40.21
Zm00001d035167_P001	Maize	nucleus	38.55	39.97
TraesCS3A01G087800.1	Wheat	plastid	30.92	39.84
TraesCS6A01G214000.1	Wheat	nucleus	35.75	39.8
KXG24325	Sorghum	nucleus	35.75	39.69
HORVU6Hr1G054560.16	Barley	nucleus	35.88	39.44
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	38.8	39.15
TraesCS6B01G244000.2	Wheat	plastid	35.75	39.03
TraesCS3D01G087900.4	Wheat	nucleus	35.37	38.83
EES07108	Sorghum	nucleus	34.86	38.54
TraesCS3B01G103200.2	Wheat	nucleus	34.99	38.46
Zm00001d017126_P001	Maize	nucleus	33.72	38.07
TraesCS3B01G141400.2	Wheat	nucleus, plastid	34.48	38.01
TraesCS3D01G124100.1	Wheat	nucleus	34.35	37.87
TraesCS3A01G122200.1	Wheat	nucleus	34.1	37.59
HORVU3Hr1G022660.1	Barley	nucleus	33.84	37.36
Zm00001d049638_P009	Maize	nucleus	36.26	36.68
GSMUA_Achr3P02670_001	Banana	nucleus	31.93	35.6
HORVU3Hr1G015760.1	Barley	nucleus	23.92	34.06
KRH21136	Soybean	nucleus	23.16	32.16
KRH11112	Soybean	nucleus	23.03	32.04
KRH10646	Soybean	nucleus	17.94	26.65
KRH21702	Soybean	nucleus	17.94	26.55
KRH10648	Soybean	nucleus	17.94	26.31
KRH22304	Soybean	nucleus	18.32	22.5
KRH27020	Soybean	nucleus	18.32	22.29
KRH45305	Soybean	nucleus	10.31	22.07
KRH04734	Soybean	nucleus	10.31	21.37
KRH37141	Soybean	cytosol, nucleus	7.0	20.15
KRH12139	Soybean	nucleus	8.91	20.06
KRH25703	Soybean	nucleus	17.56	15.79
KRH55813	Soybean	nucleus	18.07	14.42

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100780536	MapMan:15.5.54	EMBL:ACUP02009914	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G062300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K7MFH1
EnsemblPlants:KRH07022	ProteinID:KRH07022	ProteinID:KRH07022.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF227
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000296D70E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:6078725..6089821

Molecular Weight (calculated)

87329.4 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.803

Length

786 amino acids

Sequence
(BLAST)

001: MAKSRLSGGY YENAVETGGG DSEGSGTSGR IDAGNTILED SSVRRRKCIS LNSSGNDAFG VPMQVVPMSN LAPLQRKELV DRLTSELEQI RVFRKRIELQ
101: RMNDVMLSSK NDIISSRRND HNGPQVERKP SMSSSVPGNE SKPLGQSQKP REWNRGSSGK FESATRTSLL SAANALLMKD CELLLKRLMS HQYGWVFKTP
201: VDVVKLKLPD YFSIIKHPMD LGTVKSKIAA GEYAGPIEFA DDVRLTFSNA MIYNPRGNDV HVMADTLSKY FELRWKAIEK KLPRRDDVPF PSKPDTCEDV
301: KTTRTLPPSK PNSCQDVIKT TRPMPPSKKR KISTLPCQPV VMPPAKKVMS DQEKHNLGIE LESLLGEMPM HIIDFLKENC SNGEECGEDE LEIDIDDLKD
401: DTLFALRKLL DDFLLEKQMN ETKVEVREIE VLNDSGPSNS SLLPFKGNDS DDEEVDIGGN EPPVSSYPPV EIEKDTTCRI NTCLSPGSSD TDSSDSSDSE
501: SDDVKSNPAN VAKEPENMES GAQMVENSRA DDTSERNHDK QGSAPRTVIA PRQPLRNKAP CHVGESVGGL DKLEDNSQQK PSSFSSDCHQ DGECGPTERK
601: VSPDKLYRAA LLKNRFADTI LKAREKTLTK GEKGDPEKLR QQREKLEIER QKERARLQAE AKAAEDARKR ADAEAAAEAR RKRELEREAA RQVLLQMEKS
701: VEINENSQFL EDFELLSAVP AEQLPSSVDE TSPDISQDGM GSFKFGGGNP LEQLGLYIKD DDEEEEGDPL CVPNPPVNDI EEGEID

Best Arabidopsis Sequence Match ( AT3G27260.4 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.