CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03892
KRH37914
KRH57174
KRH63672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	KRH03892	AT3G48360.1	15316289
AT3G01770.1	KRH37914	AT3G48360.1	15316289
AT3G01770.1	KRH57174	AT3G48360.1	15316289
AT3G01770.1	KRH63672	AT3G48360.1	15316289
AT3G01770.1	KRH03892	AT5G63160.1	15316289
AT3G01770.1	KRH37914	AT5G63160.1	15316289
AT3G01770.1	KRH57174	AT5G63160.1	15316289
AT3G01770.1	KRH63672	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07021	Soybean	nucleus	94.74	94.49
KRH07022	Soybean	nucleus	73.99	69.85
VIT_14s0171g00380.t01	Wine grape	nucleus	64.56	64.99
Bra025262.1-P	Field mustard	nucleus	42.72	58.6
PGSC0003DMT400052108	Potato	nucleus	56.6	57.61
CDY20057	Canola	nucleus	49.73	57.21
CDY13699	Canola	nucleus	35.04	56.89
Bra039088.1-P	Field mustard	nucleus	49.87	56.84
Solyc02g093880.2.1	Tomato	nucleus	54.85	56.14
CDX83673	Canola	nucleus	35.04	52.21
KRH57199	Soybean	nucleus	50.13	50.34
AT5G14270.2	Thale cress	nucleus	46.63	50.22
KRH63729	Soybean	nucleus	52.97	50.19
AT3G01770.1	Thale cress	nucleus	41.51	49.68
KRH54219	Soybean	nucleus	52.7	49.62
GSMUA_Achr8P01140_001	Banana	nucleus	50.0	49.4
GSMUA_Achr2P20970_001	Banana	nucleus	45.42	46.81
GSMUA_Achr8P08920_001	Banana	nucleus	40.7	46.46
GSMUA_Achr10P...	Banana	nucleus	38.81	45.14
TraesCS6D01G196600.3	Wheat	nucleus	40.97	43.24
Os02t0601800-03	Rice	nucleus	41.37	43.0
GSMUA_Achr3P02660_001	Banana	plasma membrane	37.74	42.81
TraesCS6A01G214000.1	Wheat	nucleus	40.43	42.49
TraesCS3A01G087800.1	Wheat	plastid	34.37	41.8
TraesCS6B01G244000.2	Wheat	plastid	40.43	41.67
HORVU6Hr1G054560.16	Barley	nucleus	39.89	41.4
EES07108	Sorghum	nucleus	39.62	41.35
TraesCS3B01G141400.2	Wheat	nucleus, plastid	39.49	41.09
TraesCS3B01G103200.2	Wheat	nucleus	39.49	40.98
TraesCS3D01G124100.1	Wheat	nucleus	39.35	40.95
TraesCS3D01G087900.4	Wheat	nucleus	39.49	40.92
TraesCS3A01G122200.1	Wheat	nucleus	39.22	40.81
TraesCS7D01G309100.1	Wheat	nucleus	40.7	40.27
Zm00001d017126_P001	Maize	nucleus	37.74	40.23
TraesCS7A01G312700.2	Wheat	nucleus	40.57	40.13
KXG24325	Sorghum	nucleus	38.27	40.11
HORVU3Hr1G022660.1	Barley	nucleus	38.41	40.03
Zm00001d035167_P001	Maize	nucleus	40.7	39.84
TraesCS7B01G212400.2	Wheat	nucleus	40.16	39.73
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	40.43	38.51
GSMUA_Achr3P02670_001	Banana	nucleus	35.71	37.59
Zm00001d049638_P009	Maize	nucleus	38.54	36.81
HORVU3Hr1G015760.1	Barley	nucleus	26.42	35.51
KRH11112	Soybean	nucleus	24.12	31.68
KRH21136	Soybean	nucleus	24.12	31.63
KRH10646	Soybean	nucleus	19.0	26.65
KRH21702	Soybean	nucleus	18.6	25.99
KRH10648	Soybean	nucleus	18.46	25.56
KRH22304	Soybean	nucleus	19.41	22.5
KRH27020	Soybean	nucleus	19.54	22.45
KRH45305	Soybean	nucleus	10.24	20.71
KRH04734	Soybean	nucleus	10.24	20.05
KRH37141	Soybean	cytosol, nucleus	7.28	19.78
KRH12139	Soybean	nucleus	9.03	19.2
KRH25703	Soybean	nucleus	18.73	15.9
KRH55813	Soybean	nucleus	19.41	14.62

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A0R0EVS6	EMBL:ACUP02011960	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G084600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	EnsemblPlants:KRG94435
ProteinID:KRG94435	ProteinID:KRG94435.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF227	SMART:SM00297
SUPFAM:SSF47370	UniParc:UPI0006EDDA11	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:30379791..30395790

Molecular Weight (calculated)

82077.8 Da

IEP (calculated)

4.783

GRAVY (calculated)

-0.844

Length

742 amino acids

Sequence
(BLAST)

001: MMAKSRLSGG YFGNALDTAG ESEGSGSSGR IDTEITVSED SSIPARKCIS LNSSRHDVFG APVQVVPLSN MPLSHRKDLG QRLRSELEQI RLLQKKIEQQ
101: RTTAVVLSSS SDILSCSNGN NGHRVERDKK PAMSSSAPRN KAKPGNKNQK PRGWNRGSSG KFESAVQSAS PSTANAMLMK DCELLLKRLM NHQYAWVFNT
201: PVDVVKLNLP DYFTIIKRPM DLGTVKNKLA SGEYAGPLEF ADDVKLTFSN AMDYNPSGND VHLMADTLNK YFELRWKAIE KKLQKSDFLP LPANPDNSEG
301: VKTKRQAPLS KKRKIASLPP QPEVMPPTKK VMSDQEKHDL GRELESQLGE MPMHIIDFLK EHSSNGRECG DDEIEIDIDD LSDDTLFTLR KLLDDFLQKK
401: QKNKAKVEAC EVEVLNDSGP SNSSLQPFKG NDPADEEVDI GGNEPPVSSY PHVEIEKDTT YGMNKSLSPG SSNDTDSDSS SDSEADDVKA RPANAAKAPE
501: NLGSEAQLDE MTMAAASLER NQSVSGLDQL DDNSQHKPSS FDSDCQQDGD SAATERQFSP DKLYRAAVLK KRFLDTILKA REKTLTQGEK GDPEKLRQER
601: EKLEMEQKKE KARLQAEAKA AEDARKQAEE EAAAEARRKR ELEREAARQA LLQMEKTVEI NENSRILEDL ELLRAVPTEQ LPSSVDETSP AHSQDGLGSF
701: KFGSSNPLEQ LGLYIKADDE EEEGEPPCIP NPVNDVEEGE ID

Best Arabidopsis Sequence Match ( AT3G27260.4 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.