CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	KRH03376	AT5G62920.1	18642946
AT5G65630.1	KRH54462	AT5G62920.1	18642946
AT5G65630.1	KRH57009	AT5G62920.1	18642946
AT5G65630.1	KRH63457	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21702	Soybean	nucleus	91.68	91.34
KRH10648	Soybean	nucleus	86.01	84.89
VIT_03s0097g00570.t01	Wine grape	nucleus	64.84	62.14
CDY08771	Canola	nucleus	35.16	52.54
PGSC0003DMT400008041	Potato	nucleus	59.17	51.99
Solyc01g106280.2.1	Tomato	nucleus	59.17	51.99
CDX78390	Canola	nucleus	21.55	47.7
CDX70356	Canola	nucleus, plastid	22.12	47.37
CDY65645	Canola	nucleus, plastid	45.18	46.95
Bra024402.1-P	Field mustard	nucleus, plastid	45.37	44.04
OQU82367	Sorghum	nucleus	24.95	43.71
GSMUA_Achr3P00480_001	Banana	nucleus	42.91	43.49
CDY65656	Canola	cytosol	16.64	42.51
AT5G10550.1	Thale cress	nucleus	46.5	42.34
Zm00001d046528_P001	Maize	cytosol	11.91	42.0
AT5G65630.1	Thale cress	nucleus	46.69	41.86
GSMUA_Achr1P15650_001	Banana	nucleus	38.75	41.67
Bra006068.1-P	Field mustard	nucleus	42.53	40.98
Os04t0622800-00	Rice	cytosol	24.01	40.84
Zm00001d002267_P001	Maize	plastid	33.65	39.47
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	33.84	39.25
Bra005311.1-P	Field mustard	cytosol, plastid	17.2	39.06
TraesCS2B01G489500.1	Wheat	plastid	33.84	38.66
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	34.03	38.54
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	34.22	38.51
Os08t0192800-01	Rice	nucleus	33.46	36.8
Zm00001d026333_P001	Maize	cytosol	31.19	35.03
KXG24660	Sorghum	plastid	32.51	34.96
Zm00001d049400_P001	Maize	plastid	31.57	34.5
Zm00001d024251_P001	Maize	cytosol	30.06	32.65
KRH27020	Soybean	nucleus	38.0	31.11
KRH22304	Soybean	nucleus	37.62	31.09
CDX70357	Canola	plastid	21.17	28.5
KRH04734	Soybean	nucleus	16.45	22.96
KRH45305	Soybean	nucleus	15.31	22.07
KRH25703	Soybean	nucleus	35.73	21.62
KRH63729	Soybean	nucleus	31.57	21.33
KRH57199	Soybean	nucleus	28.92	20.7
KRH37141	Soybean	cytosol, nucleus	10.59	20.51
KRH54219	Soybean	nucleus	30.06	20.18
KRH12139	Soybean	nucleus	13.23	20.06
KRH07021	Soybean	nucleus	27.22	19.35
KRH55813	Soybean	nucleus	35.73	19.19
KRG94435	Soybean	nucleus	26.65	19.0
KRH07022	Soybean	nucleus	26.65	17.94
KRH21136	Soybean	nucleus	16.82	15.72
KRH11112	Soybean	nucleus	16.26	15.22

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100819363	MapMan:15.5.54	EMBL:ACUP02009150	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G060200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	UniProt:I1ME28	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
ProteinID:KRH10645.1	EnsemblPlants:KRH10646	ProteinID:KRH10646	ProteinID:KRH10646.1	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000233B5B5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:4653499..4656122

Molecular Weight (calculated)

58228.2 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.909

Length

529 amino acids

Sequence
(BLAST)

001: MASAVLANRN EPNWQRHRGG GAGFMGKTPF SNPNSKLANS KRTQSASDDA SSINRRSNDA LTHSQYVTFN IASCTKKELN DFKNLLVSEL EQIRKLRNQI
101: ESSEFQPGQS LNGHPKKPSS KKVSGNKRPW PSNSAKDLKR SHSEAGNLMK CCSQVLQKLM KHKHGWVFNA PVDIVGLKLH DYCDIIKQPM DLGTVKSNLS
201: KNVYATPADF ASDVRLTFNN ALAYNPKGHD VYTMAEQLLA RFEELYRPVH EKFEGSISHD RESEEELQAS SWSHVEPERV KKKEKPPPPP PAKLQQEPPL
301: PPASSSNPPL LQSPVRTPSP MRVPPVKPLK QPKPKAKDPN KRDMSLEEKH KLGLGLQSLP PEKMEQVVQI IRRRNGHLKQ DGDEIELDIE AVDTETLWEL
401: DRLVTNYKKM VSKIKRQALM GNTNNNNNDA QSNKGNGELP ASEKVDGAPV EVKKAKKVEA GEEDIDIGDE MPTSMFPPVE IEKDKDVAGG RGSSSSSSSG
501: SSSSDSSSSS DSDSGSSSGS DSEADNGLS

Best Arabidopsis Sequence Match ( AT1G73150.1 )
(BLAST)

001: MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGHVAS TVRQEVNVGG SSSSNSSSSG SGSGSSGSDS DSSGHESDTG N

Arabidopsis Description

GTE3Transcription factor GTE3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.