CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	KRH03376	AT5G62920.1	18642946
AT5G65630.1	KRH54462	AT5G62920.1	18642946
AT5G65630.1	KRH57009	AT5G62920.1	18642946
AT5G65630.1	KRH63457	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10646	Soybean	nucleus	91.34	91.68
KRH10648	Soybean	nucleus	85.31	84.51
VIT_03s0097g00570.t01	Wine grape	nucleus	63.65	61.23
CDY08771	Canola	nucleus	34.46	51.69
PGSC0003DMT400008041	Potato	nucleus	57.06	50.33
Solyc01g106280.2.1	Tomato	nucleus	56.69	50.0
CDX78390	Canola	nucleus	21.47	47.7
CDX70356	Canola	nucleus, plastid	22.03	47.37
CDY65645	Canola	nucleus, plastid	44.26	46.17
OQU82367	Sorghum	nucleus	25.05	44.04
Zm00001d046528_P001	Maize	cytosol	12.43	44.0
Bra024402.1-P	Field mustard	nucleus, plastid	44.44	43.3
GSMUA_Achr3P00480_001	Banana	nucleus	42.37	43.1
CDY65656	Canola	cytosol	16.76	43.0
GSMUA_Achr1P15650_001	Banana	nucleus	38.79	41.87
AT5G10550.1	Thale cress	nucleus	45.57	41.65
AT5G65630.1	Thale cress	nucleus	45.76	41.19
Os04t0622800-00	Rice	cytosol	24.11	41.16
Bra006068.1-P	Field mustard	nucleus	42.37	40.98
Zm00001d002267_P001	Maize	plastid	34.09	40.13
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	34.09	39.69
Bra005311.1-P	Field mustard	cytosol, plastid	17.33	39.48
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	34.65	39.4
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	34.84	39.36
TraesCS2B01G489500.1	Wheat	plastid	34.09	39.09
Os08t0192800-01	Rice	nucleus	33.71	37.21
Zm00001d026333_P001	Maize	cytosol	32.02	36.09
KXG24660	Sorghum	plastid	32.96	35.57
Zm00001d049400_P001	Maize	plastid	32.02	35.12
Zm00001d024251_P001	Maize	cytosol	30.51	33.26
KRH22304	Soybean	nucleus	36.91	30.62
KRH27020	Soybean	nucleus	37.1	30.5
CDX70357	Canola	plastid	20.9	28.24
KRH04734	Soybean	nucleus	16.38	22.96
KRH45305	Soybean	nucleus	15.63	22.62
KRH37141	Soybean	cytosol, nucleus	10.92	21.25
KRH25703	Soybean	nucleus	34.84	21.17
KRH63729	Soybean	nucleus	30.7	20.82
KRH12139	Soybean	nucleus	13.37	20.34
KRH57199	Soybean	nucleus	28.06	20.16
KRH54219	Soybean	nucleus	29.38	19.8
KRH07021	Soybean	nucleus	27.12	19.35
KRH55813	Soybean	nucleus	34.84	18.78
KRG94435	Soybean	nucleus	25.99	18.6
KRH07022	Soybean	nucleus	26.55	17.94
KRH21136	Soybean	nucleus	16.2	15.19
KRH11112	Soybean	nucleus	16.01	15.04

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100802622	MapMan:15.5.54	EMBL:ACUP02008362	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G254500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1M2K1	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	EnsemblPlants:KRH21702
ProteinID:KRH21702	ProteinID:KRH21702.1	ProteinID:KRH21703.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0001BA570A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:36034639..36037291

Molecular Weight (calculated)

58406.4 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.929

Length

531 amino acids

Sequence
(BLAST)

001: MASAYRNEPN WPRHRSGGAG FMGKVPFSNP NPNPNSNPKL ANGKKTQSAS DDASSINRRS NDAATHSQYV TFNVASCTKK ELNDFKNRLV SELEQIQKLR
101: NQIGSSEFQP GQSLNGHPKK PSGKKISGNK RPLPSNSAKD LKRSHSEVGN LMKCCSQVLQ KLIKHKHGWV FKAPVDVVGL KLHDYCDIIK QPMDLGTVKS
201: NLSKNVYATP ADFASDVRLT FNNALAYNPK GHDVYTMAEQ LLARFEELYR PVHEKFEGSI VHDRESEEEL QASSWSQVEP ERVKKKENPI PPAKLHKEPP
301: PQHPASSSNP PLVQSPVRTP SPMRAPPVKP LKQPKPKAKD PNKRDMSLEE KHKLGLGLQS LPPEKMEQVV QIIRRRNGHL KQDGDEIELD IEAVDTETLW
401: ELDRLVTNYK KMVSKIKRQA LMGNIDNNNN DVQSNKGNGE LPSSEKVDGG PVEVKKPKKV EAGDEDIDIG DEMPTSMFPP VEIEKDKDVV GGHASSSSSS
501: SGSSSSDSSS SSDSDSGSSS GSDSEADNGH S

Best Arabidopsis Sequence Match ( AT1G06230.1 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.