CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84366
CDY00336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65630.1	CDX84366	AT5G62920.1	18642946
AT5G65630.1	CDY00336	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08771	Canola	nucleus	62.28	89.55
Bra024402.1-P	Field mustard	nucleus, plastid	93.12	86.97
CDX78390	Canola	nucleus	35.17	74.9
CDX70356	Canola	nucleus, plastid	35.76	73.68
AT5G65630.1	Thale cress	nucleus	84.68	73.05
CDY65656	Canola	cytosol	21.81	53.62
KRH10646	Soybean	nucleus	46.95	45.18
KRH10648	Soybean	nucleus	47.35	44.96
VIT_03s0097g00570.t01	Wine grape	nucleus	48.53	44.75
KRH21702	Soybean	nucleus	46.17	44.26
CDY15568	Canola	nucleus	26.52	42.59
GSMUA_Achr3P00480_001	Banana	nucleus	40.67	39.66
GSMUA_Achr1P15650_001	Banana	nucleus	37.52	38.82
PGSC0003DMT400078795	Potato	nucleus	44.01	37.84
CDY66497	Canola	nucleus	11.39	37.42
Os04t0622800-00	Rice	cytosol	22.79	37.3
CDX96751	Canola	nucleus, plastid	26.72	37.16
CDX83890	Canola	nucleus, plastid	26.72	37.16
OQU82367	Sorghum	nucleus	22.0	37.09
CDX82103	Canola	plastid	22.4	36.42
Zm00001d046528_P001	Maize	cytosol	10.61	36.0
Solyc02g091660.2.1	Tomato	nucleus	37.33	35.51
CDY48040	Canola	nucleus, plastid	27.31	35.46
Os04t0623100-01	Rice	cytosol, mitochondrion, nucleus, plastid	31.63	35.31
Zm00001d002267_P001	Maize	plastid	31.24	35.26
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	31.43	34.26
TraesCS2B01G489500.1	Wheat	plastid	31.04	34.13
CDY19175	Canola	nucleus, plastid	25.74	34.11
Os08t0192800-01	Rice	nucleus	32.22	34.1
TraesCS2D01G466700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.04	33.62
CDY26219	Canola	nucleus	12.18	33.33
CDX70357	Canola	plastid	25.34	32.82
Zm00001d049400_P001	Maize	plastid	31.04	32.64
CDY26215	Canola	mitochondrion	26.52	32.61
Zm00001d026333_P001	Maize	cytosol	29.86	32.27
KXG24660	Sorghum	plastid	31.04	32.11
CDX82101	Canola	nucleus	11.39	31.69
Zm00001d024251_P001	Maize	cytosol	29.47	30.8
CDY21732	Canola	cytosol	13.56	27.17
CDY09981	Canola	nucleus	31.43	25.04
CDY06203	Canola	nucleus	31.43	24.84
CDX86532	Canola	nucleus	30.84	22.27
CDX81848	Canola	cytosol, nucleus, plastid	11.39	21.09
CDX90608	Canola	cytosol	12.38	17.7
CDY29075	Canola	cytoskeleton, cytosol, nucleus	12.38	17.31
CDY31648	Canola	nucleus	14.15	16.94
CDY20057	Canola	nucleus	21.41	16.9
CDX84278	Canola	nucleus	14.15	16.44
CDY72432	Canola	cytosol	15.32	15.45
CDY68605	Canola	cytosol	15.91	14.75
CDX84396	Canola	nucleus	17.68	14.68
CDY43984	Canola	endoplasmic reticulum	10.41	12.13
CDY48139	Canola	nucleus	18.47	10.63
CDY13699	Canola	nucleus	9.23	10.28
CDY16729	Canola	nucleus	21.41	9.54
CDX83673	Canola	nucleus	9.23	9.44

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A078JGK1	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
EnsemblPlants:CDY65645	ProteinID:CDY65645	ProteinID:CDY65645.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00046975001	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427
InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503
PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI0004EE6A5C	SEG:seg	:	:	:	:

Description

BnaAnng20870DBnaAnng20870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGK1]

Coordinates

chrLK034873:-:11364..13496

Molecular Weight (calculated)

55835.7 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.642

Length

509 amino acids

Sequence
(BLAST)

001: MAPAVLSTLN EPSFHGQCGA VFMRKFTKQS VAENSSSPLP PLFSPNPNPN FDSSKGFDDS SNYGGYATFN LAGYNSSQLR ELKKRFTSEL EQIRILRERI
101: ESGTFESQRV EVSAVRVESK KRCNPFGSEE TPPKRERVLA SMLNTCGQML VKLMKHKWAW VFNTPVDVVG LGLHDYHLIV KKPMDLGTVK LNLEKGFYVS
201: PLDFATDVRL TFRNAMAYNP KGQDVYFMAE KLLDQFDKHW SQSPVEANVR RGTEQISIAK KLDSVKPLQP TLSPPQVVEP ARERTPPPPP QVEAPPDVSE
301: VTKGRNGKLP KPKAKDPNKR LMTMEEKSKL GMNLQDLPPE KLGQLVQILR KRNGHLAQDG DEIELDIEAV DNETLWELDR FVTNYKKMAS KIKRQGFIHN
401: VSTPPAARHM ASDAEIGSAE KRTRKGDAGE EDVDIGEDIP IEDYPSVEIE RDGTAVAAAA SSGSSSSGSS SSSSGSSSSD SGSGGSSSGS DSDADSVQSP
501: FVEAKEAQG

Best Arabidopsis Sequence Match ( AT5G65630.1 )
(BLAST)

001: MAPAVFATLN EPSYQEQCGA VFMRKFTNQS VTENTNNLPL FNPNPNPNFE RSNSSKQCDD SSEFGSYATF NLAGYTSSQL RELKKRFTSE LKQIRILRER
101: IESGTFETQQ GYTIPEVPAV RSAPLNNFTG EKNDLGPKKK KQKKNVSGLK RSNQFGPSDP ESEKLLAGML NTCSQILVKL MKHKWAWVFN TPVDVVGLGL
201: HDYHQVVKKP MDLGTVKLNL DKGFYVSPID FATDVRLTFD NAMTYNPKGQ DVYFMADKLL DHFDGMFNPA FKKFEAQQLK LTGSSSRPEP DFKPDFKQRQ
301: WNQNPPMVAN PRKGTEQISI AKKLDSVKPP QPTLPPQLVE PSRVQSPSPP PPPPVIQPEL PQPQPPPPQL EIEVEAPPDV SEVSKGRKGK LPKPKAKDPN
401: KRLMTMEEKS KLGMNLQDLP PEKLGQLLQI LRKRNGHLAQ DGDEIELDIE AVDNETLWEL DRFVTNYKKM ASKIKRQGFI RNVSTPPRNM ASVAEMGSAE
501: KRTRRGDAGE EDVDIGEDIP IEDYPSVEIE RDGTAVAAAA SSGSSSSGSS SSSGGSSSSS DSGSGGSSSG SDSDADSVQS PFVEAKEAQC

Arabidopsis Description

GTE7Transcription factor GTE7 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y214]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.