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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06203 Canola nucleus 90.14 89.44
Bra032431.1-P Field mustard nucleus 91.86 89.35
CDY15568 Canola nucleus 42.88 86.44
CDX86532 Canola nucleus 82.0 74.33
AT1G06230.2 Thale cress nucleus 81.38 67.89
CDY68605 Canola cytosol 54.62 63.57
CDY72432 Canola cytosol 49.14 62.18
Solyc10g008070.2.1 Tomato nucleus 28.64 50.55
KRH22304 Soybean nucleus 50.39 50.31
KRH27020 Soybean nucleus 50.86 50.31
PGSC0003DMT400027387 Potato nucleus 43.04 47.74
GSMUA_Achr10P... Banana nucleus, plastid 33.02 47.2
VIT_12s0028g02510.t01 Wine grape nucleus 47.57 46.48
CDY66497 Canola nucleus 11.27 46.45
GSMUA_Achr11P... Banana nucleus 29.42 44.44
GSMUA_Achr7P09350_001 Banana nucleus, plastid 35.05 43.58
CDY19175 Canola nucleus, plastid 25.98 43.23
CDX96751 Canola nucleus, plastid 24.73 43.17
Zm00001d008922_P001 Maize plastid 32.71 42.65
CDX83890 Canola nucleus, plastid 24.41 42.62
TraesCS3D01G146600.1 Wheat nucleus, plastid 32.55 41.11
CDY48040 Canola nucleus, plastid 25.2 41.07
CDY26215 Canola mitochondrion 26.6 41.06
TraesCS3B01G164100.1 Wheat nucleus, plastid 32.71 40.98
CDY26219 Canola nucleus 11.89 40.86
TraesCS3A01G140500.1 Wheat nucleus, plastid 32.55 40.78
Os01t0214300-01 Rice cytosol, nucleus 10.49 40.36
EES02258 Sorghum plastid 28.01 40.13
GSMUA_Achr1P11660_001 Banana nucleus 32.08 39.96
CDX82101 Canola nucleus 11.42 39.89
KRH25703 Soybean nucleus 52.74 38.56
Os02t0250300-01 Rice nucleus 39.44 38.41
CDY08771 Canola nucleus 20.97 37.85
CDX82103 Canola plastid 18.47 37.7
Zm00001d016131_P006 Maize nucleus 39.12 37.26
HORVU6Hr1G045030.1 Barley nucleus 36.46 36.81
HORVU6Hr1G045070.4 Barley nucleus 36.62 36.79
OQU84709 Sorghum nucleus 40.69 36.52
TraesCS6D01G177700.1 Wheat cytosol, plastid 35.99 36.22
KRH55813 Soybean nucleus 52.74 34.21
CDY21732 Canola cytosol 13.15 33.07
CDY65656 Canola cytosol 10.49 32.37
CDX78390 Canola nucleus 11.89 31.8
Zm00001d053427_P007 Maize nucleus 33.8 31.63
CDX70356 Canola nucleus, plastid 12.21 31.58
CDY65645 Canola nucleus, plastid 25.04 31.43
CDX81848 Canola cytosol, nucleus, plastid 11.27 26.18
CDX90608 Canola cytosol 11.89 21.35
Zm00001d039369_P004 Maize plastid 30.52 20.81
CDY29075 Canola cytoskeleton, cytosol, nucleus 11.58 20.33
CDX70357 Canola plastid 12.36 20.1
CDY31648 Canola nucleus 12.52 18.82
CDX84278 Canola nucleus 12.52 18.26
CDY20057 Canola nucleus 18.15 17.98
CDX84396 Canola nucleus 12.83 13.38
CDY43984 Canola endoplasmic reticulum 8.76 12.81
CDY48139 Canola nucleus 14.4 10.41
CDY13699 Canola nucleus 7.36 10.28
CDY16729 Canola nucleus 17.53 9.81
CDX83673 Canola nucleus 7.51 9.64
Protein Annotations
Gene3D:1.20.1270.220Gene3D:1.20.920.10MapMan:15.5.54UniProt:A0A078F9D1InterPro:BromodomainInterPro:Bromodomain-like_sf
EnsemblPlants:CDY09981ProteinID:CDY09981ProteinID:CDY09981.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00031757001InterPro:GTE_bromoInterPro:IPR001487InterPro:IPR027353InterPro:IPR036427
InterPro:IPR038336InterPro:NET_domInterPro:NET_sfPFAM:PF00439PFAM:PF17035PRINTS:PR00503
PFscan:PS50014PFscan:PS51525PANTHER:PTHR22880PANTHER:PTHR22880:SF147SMART:SM00297SUPFAM:SSF47370
UniParc:UPI0004EE6EF0SEG:seg::::
Description
BnaC08g44700DBnaC08g44700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9D1]
Coordinates
chrLK032000:-:330211..333692
Molecular Weight (calculated)
70752.7 Da
IEP (calculated)
6.481
GRAVY (calculated)
-0.846
Length
639 amino acids
Sequence
(BLAST)
001: MASEPVNGDG AREKQSIRVY TRKGKGQRKH SPYFAFDGGG DKPENNHVSP PETLARESLD PLHEARASAP EARAILDATD KNVIQPNSTK EPPKSLPLDD
101: ATTMIVDKKA IEAPSEALVV DKNLIEVSSE DEDYVHVVDE DHLIKEANLV ERDATDTAAE SMPMEEDVDG RIRIHVASKS KQQKEEIRKR LEDQLSVVRG
201: LVKKIEDKEG EIGAYHDSPL TNGGGRILSG FASAGLPREV IRVPRPLNQL SISVLENTQG VNDHMEKEKR TPKANQFYRT SEFLLGDKLP PAESNKKSKS
301: SSKKYGGEAG HGFGAGSKVF KNCSALLERL MKHKHGWVFN APVDVKGLGL HDYFTIIEHP MDLGTVKSTL TNNLYKSPRE FAEDVRLTFH NAMTYNPPGQ
401: DVHIMAQVLL QMFEERWAVI ESDYNPSTMR NSTMDWSSRP ADLQHPKPNT TTPGRTPTSA RTPALKKPKA NEPNKRDMTY EEKQKLSGHL QNLPPDKLDA
501: IVQIVNRRNT AVNLRDEEIE VDIDSVDPET LWELDRFVIN YKKGLSKKKR KAELAMQARV EAERNGQQQM APAPVAREFS REGGNTAKKT LPTSLPSQVE
601: EQNNEPSRSS SSSSSSSGSS SSSSDSDSDS SSSSGSDQT
Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.