Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY06203 | Canola | nucleus | 90.14 | 89.44 |
Bra032431.1-P | Field mustard | nucleus | 91.86 | 89.35 |
CDY15568 | Canola | nucleus | 42.88 | 86.44 |
CDX86532 | Canola | nucleus | 82.0 | 74.33 |
AT1G06230.2 | Thale cress | nucleus | 81.38 | 67.89 |
CDY68605 | Canola | cytosol | 54.62 | 63.57 |
CDY72432 | Canola | cytosol | 49.14 | 62.18 |
Solyc10g008070.2.1 | Tomato | nucleus | 28.64 | 50.55 |
KRH22304 | Soybean | nucleus | 50.39 | 50.31 |
KRH27020 | Soybean | nucleus | 50.86 | 50.31 |
PGSC0003DMT400027387 | Potato | nucleus | 43.04 | 47.74 |
GSMUA_Achr10P... | Banana | nucleus, plastid | 33.02 | 47.2 |
VIT_12s0028g02510.t01 | Wine grape | nucleus | 47.57 | 46.48 |
CDY66497 | Canola | nucleus | 11.27 | 46.45 |
GSMUA_Achr11P... | Banana | nucleus | 29.42 | 44.44 |
GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 35.05 | 43.58 |
CDY19175 | Canola | nucleus, plastid | 25.98 | 43.23 |
CDX96751 | Canola | nucleus, plastid | 24.73 | 43.17 |
Zm00001d008922_P001 | Maize | plastid | 32.71 | 42.65 |
CDX83890 | Canola | nucleus, plastid | 24.41 | 42.62 |
TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 32.55 | 41.11 |
CDY48040 | Canola | nucleus, plastid | 25.2 | 41.07 |
CDY26215 | Canola | mitochondrion | 26.6 | 41.06 |
TraesCS3B01G164100.1 | Wheat | nucleus, plastid | 32.71 | 40.98 |
CDY26219 | Canola | nucleus | 11.89 | 40.86 |
TraesCS3A01G140500.1 | Wheat | nucleus, plastid | 32.55 | 40.78 |
Os01t0214300-01 | Rice | cytosol, nucleus | 10.49 | 40.36 |
EES02258 | Sorghum | plastid | 28.01 | 40.13 |
GSMUA_Achr1P11660_001 | Banana | nucleus | 32.08 | 39.96 |
CDX82101 | Canola | nucleus | 11.42 | 39.89 |
KRH25703 | Soybean | nucleus | 52.74 | 38.56 |
Os02t0250300-01 | Rice | nucleus | 39.44 | 38.41 |
CDY08771 | Canola | nucleus | 20.97 | 37.85 |
CDX82103 | Canola | plastid | 18.47 | 37.7 |
Zm00001d016131_P006 | Maize | nucleus | 39.12 | 37.26 |
HORVU6Hr1G045030.1 | Barley | nucleus | 36.46 | 36.81 |
HORVU6Hr1G045070.4 | Barley | nucleus | 36.62 | 36.79 |
OQU84709 | Sorghum | nucleus | 40.69 | 36.52 |
TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 35.99 | 36.22 |
KRH55813 | Soybean | nucleus | 52.74 | 34.21 |
CDY21732 | Canola | cytosol | 13.15 | 33.07 |
CDY65656 | Canola | cytosol | 10.49 | 32.37 |
CDX78390 | Canola | nucleus | 11.89 | 31.8 |
Zm00001d053427_P007 | Maize | nucleus | 33.8 | 31.63 |
CDX70356 | Canola | nucleus, plastid | 12.21 | 31.58 |
CDY65645 | Canola | nucleus, plastid | 25.04 | 31.43 |
CDX81848 | Canola | cytosol, nucleus, plastid | 11.27 | 26.18 |
CDX90608 | Canola | cytosol | 11.89 | 21.35 |
Zm00001d039369_P004 | Maize | plastid | 30.52 | 20.81 |
CDY29075 | Canola | cytoskeleton, cytosol, nucleus | 11.58 | 20.33 |
CDX70357 | Canola | plastid | 12.36 | 20.1 |
CDY31648 | Canola | nucleus | 12.52 | 18.82 |
CDX84278 | Canola | nucleus | 12.52 | 18.26 |
CDY20057 | Canola | nucleus | 18.15 | 17.98 |
CDX84396 | Canola | nucleus | 12.83 | 13.38 |
CDY43984 | Canola | endoplasmic reticulum | 8.76 | 12.81 |
CDY48139 | Canola | nucleus | 14.4 | 10.41 |
CDY13699 | Canola | nucleus | 7.36 | 10.28 |
CDY16729 | Canola | nucleus | 17.53 | 9.81 |
CDX83673 | Canola | nucleus | 7.51 | 9.64 |
Protein Annotations
Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | UniProt:A0A078F9D1 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf |
EnsemblPlants:CDY09981 | ProteinID:CDY09981 | ProteinID:CDY09981.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00031757001 | InterPro:GTE_bromo | InterPro:IPR001487 | InterPro:IPR027353 | InterPro:IPR036427 |
InterPro:IPR038336 | InterPro:NET_dom | InterPro:NET_sf | PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 |
PFscan:PS50014 | PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | SMART:SM00297 | SUPFAM:SSF47370 |
UniParc:UPI0004EE6EF0 | SEG:seg | : | : | : | : |
Description
BnaC08g44700DBnaC08g44700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9D1]
Coordinates
chrLK032000:-:330211..333692
Molecular Weight (calculated)
70752.7 Da
IEP (calculated)
6.481
GRAVY (calculated)
-0.846
Length
639 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEPVNGDG AREKQSIRVY TRKGKGQRKH SPYFAFDGGG DKPENNHVSP PETLARESLD PLHEARASAP EARAILDATD KNVIQPNSTK EPPKSLPLDD
101: ATTMIVDKKA IEAPSEALVV DKNLIEVSSE DEDYVHVVDE DHLIKEANLV ERDATDTAAE SMPMEEDVDG RIRIHVASKS KQQKEEIRKR LEDQLSVVRG
201: LVKKIEDKEG EIGAYHDSPL TNGGGRILSG FASAGLPREV IRVPRPLNQL SISVLENTQG VNDHMEKEKR TPKANQFYRT SEFLLGDKLP PAESNKKSKS
301: SSKKYGGEAG HGFGAGSKVF KNCSALLERL MKHKHGWVFN APVDVKGLGL HDYFTIIEHP MDLGTVKSTL TNNLYKSPRE FAEDVRLTFH NAMTYNPPGQ
401: DVHIMAQVLL QMFEERWAVI ESDYNPSTMR NSTMDWSSRP ADLQHPKPNT TTPGRTPTSA RTPALKKPKA NEPNKRDMTY EEKQKLSGHL QNLPPDKLDA
501: IVQIVNRRNT AVNLRDEEIE VDIDSVDPET LWELDRFVIN YKKGLSKKKR KAELAMQARV EAERNGQQQM APAPVAREFS REGGNTAKKT LPTSLPSQVE
601: EQNNEPSRSS SSSSSSSGSS SSSSDSDSDS SSSSGSDQT
101: ATTMIVDKKA IEAPSEALVV DKNLIEVSSE DEDYVHVVDE DHLIKEANLV ERDATDTAAE SMPMEEDVDG RIRIHVASKS KQQKEEIRKR LEDQLSVVRG
201: LVKKIEDKEG EIGAYHDSPL TNGGGRILSG FASAGLPREV IRVPRPLNQL SISVLENTQG VNDHMEKEKR TPKANQFYRT SEFLLGDKLP PAESNKKSKS
301: SSKKYGGEAG HGFGAGSKVF KNCSALLERL MKHKHGWVFN APVDVKGLGL HDYFTIIEHP MDLGTVKSTL TNNLYKSPRE FAEDVRLTFH NAMTYNPPGQ
401: DVHIMAQVLL QMFEERWAVI ESDYNPSTMR NSTMDWSSRP ADLQHPKPNT TTPGRTPTSA RTPALKKPKA NEPNKRDMTY EEKQKLSGHL QNLPPDKLDA
501: IVQIVNRRNT AVNLRDEEIE VDIDSVDPET LWELDRFVIN YKKGLSKKKR KAELAMQARV EAERNGQQQM APAPVAREFS REGGNTAKKT LPTSLPSQVE
601: EQNNEPSRSS SSSSSSSGSS SSSSDSDSDS SSSSGSDQT
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.