Factsheet for GSMUA_Achr11P12260_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus, plastid	68.09	64.43
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	67.85	55.84
CDY15568	Canola	nucleus	35.93	47.95
CDX82103	Canola	plastid	33.81	45.69
GSMUA_Achr1P11660_001	Banana	nucleus	51.3	42.3
CDX82101	Canola	nucleus	18.2	42.08
CDX96751	Canola	nucleus, plastid	35.7	41.26
CDX83890	Canola	nucleus, plastid	35.7	41.26
CDY48040	Canola	nucleus, plastid	37.12	40.05
Bra008074.1-P	Field mustard	nucleus, plastid	36.88	39.8
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	33.33	39.72
CDY19175	Canola	nucleus, plastid	34.75	38.28
VIT_19s0014g01650.t01	Wine grape	nucleus	53.9	38.19
VIT_12s0028g02510.t01	Wine grape	nucleus	58.39	37.77
PGSC0003DMT400027387	Potato	nucleus	51.3	37.67
AT1G73150.1	Thale cress	plastid	40.9	37.53
KRH27020	Soybean	nucleus	56.97	37.31
KRH22304	Soybean	nucleus	56.03	37.03
Bra016586.1-P	Field mustard	nucleus, plastid	37.83	36.36
CDY21732	Canola	cytosol	21.28	35.43
Bra025948.1-P	Field mustard	mitochondrion	34.04	34.78
CDY26215	Canola	mitochondrion	33.81	34.54
AT1G17790.1	Thale cress	nucleus, plastid	39.48	34.29
Os02t0250300-01	Rice	nucleus	52.48	33.84
Zm00001d016131_P006	Maize	nucleus	53.66	33.83
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	24.82	33.76
TraesCS6D01G177700.1	Wheat	cytosol, plastid	50.35	33.54
HORVU6Hr1G045030.1	Barley	nucleus	50.12	33.49
HORVU6Hr1G045070.4	Barley	nucleus	50.12	33.33
Zm00001d053427_P007	Maize	nucleus	53.43	33.09
CDY66497	Canola	nucleus	12.06	32.9
OQU84709	Sorghum	nucleus	54.37	32.3
Solyc10g008070.2.1	Tomato	nucleus	26.48	30.94
CDY26219	Canola	nucleus	13.48	30.65
CDY06203	Canola	nucleus	44.92	29.5
CDY09981	Canola	nucleus	44.44	29.42
Bra032431.1-P	Field mustard	nucleus	45.15	29.07
Solyc12g014170.1.1	Tomato	nucleus	46.34	27.96
CDX86532	Canola	nucleus	46.57	27.94
GSMUA_Achr1P15650_001	Banana	nucleus	32.39	27.85
PGSC0003DMT400032373	Potato	nucleus	48.7	27.8
PGSC0003DMT400039787	Potato	nucleus	46.1	27.7
GSMUA_Achr3P00480_001	Banana	nucleus	34.04	27.59
Solyc07g062660.2.1	Tomato	nucleus	48.7	27.39
Bra030643.1-P	Field mustard	nucleus	47.28	27.06
KRH25703	Soybean	nucleus	54.61	26.43
AT1G06230.2	Thale cress	nucleus	47.52	26.24
CDX81848	Canola	cytosol, nucleus, plastid	17.02	26.18
Bra015485.1-P	Field mustard	nucleus	46.34	26.17
KRH55813	Soybean	nucleus	55.08	23.65
GSMUA_Achr8P29340_001	Banana	nucleus	20.57	22.25
CDY68605	Canola	cytosol	27.9	21.49
CDY72432	Canola	cytosol	25.06	20.99
GSMUA_Achr8P34430_001	Banana	nucleus	18.2	17.91
GSMUA_Achr10P...	Banana	nucleus	25.3	16.77
GSMUA_Achr8P08920_001	Banana	nucleus	23.4	15.23
GSMUA_Achr2P20970_001	Banana	nucleus	25.77	15.14
GSMUA_Achr3P02660_001	Banana	plasma membrane	22.7	14.68
GSMUA_Achr8P01140_001	Banana	nucleus	25.77	14.51
GSMUA_Achr3P02670_001	Banana	nucleus	22.7	13.62
GSMUA_Achr4P27780_001	Banana	nucleus	17.02	10.68

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G12260_001	EnsemblPlants:GSMUA_Achr11P12260_001	EnsemblPlants:GSMUA_Achr11T12260_001
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0RRK6
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002963A29
SEG:seg	:	:	:	:	:

Description

Putative Bromodomain-containing protein GTE3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G12260_001]

Coordinates

chr11:-:11268805..11270614

Molecular Weight (calculated)

47573.8 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.652

Length

423 amino acids

Sequence
(BLAST)

001: MASGPLVGGG AGGDGSREKH RWAESSKVYT RKSSNKTPKP SSNPQPPAPS AAENNDLDSA RRQHSQPAPA PPAASDDASS SLNRPPADPA FAANGHGRSV
101: TISLASRSRQ EMQELRRKLA TELEQVRALS RRLEAHELQL ASAAAFKSCV VLLSKLMKHK YGWVFNKPVD AKALGLHDYY NIIKHPMDLG TVKSRLAKNW
201: YKSPQDFAED VRLTFCNAMT YNPKGQDVHV MAEQLLQVFE EHWPAIEAEF AYFSHPLAPK KPPPLDMRML ERSDSTKPKA KDMNKRDMTF EEKQKLSNNL
301: QKLPPEKLES IVQIIKKRNS SLNQHDDEIE VDIDSVDVET LWELDRFVTN YKKSLSKNKR KAELAILARQ EAELNTQEMA QGMIQEAVVA EVLEKSKTGK
401: LQVSPGFFWL QYVIRCLLAY LKM

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.