Factsheet for Bra008074.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48040	Canola	nucleus, plastid	99.49	99.49
AT1G73150.1	Thale cress	plastid	75.0	63.77
Bra016586.1-P	Field mustard	nucleus, plastid	64.54	57.5
Bra025948.1-P	Field mustard	mitochondrion	60.46	57.25
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	49.49	54.65
GSMUA_Achr11P...	Banana	nucleus	39.8	36.88
GSMUA_Achr10P...	Banana	nucleus, plastid	40.31	35.35
Zm00001d008922_P001	Maize	plastid	42.6	34.08
TraesCS3D01G146600.1	Wheat	nucleus, plastid	43.11	33.4
TraesCS3B01G164100.1	Wheat	nucleus, plastid	43.11	33.14
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	43.37	33.07
TraesCS3A01G140500.1	Wheat	nucleus, plastid	42.86	32.94
EES02258	Sorghum	plastid	36.73	32.29
GSMUA_Achr1P11660_001	Banana	nucleus	40.82	31.19
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	24.49	30.87
Os01t0214300-01	Rice	cytosol, nucleus	12.76	30.12
VIT_19s0014g01650.t01	Wine grape	nucleus	44.64	29.31
Bra024402.1-P	Field mustard	nucleus, plastid	36.22	26.05
Bra038624.1-P	Field mustard	nucleus	16.07	26.03
Bra006068.1-P	Field mustard	nucleus	34.95	24.95
Bra005311.1-P	Field mustard	cytosol, plastid	14.8	24.89
Bra032431.1-P	Field mustard	nucleus	41.33	24.66
Os02t0250300-01	Rice	nucleus	40.82	24.39
TraesCS6D01G177700.1	Wheat	cytosol, plastid	38.52	23.78
HORVU6Hr1G045030.1	Barley	nucleus	38.27	23.7
HORVU6Hr1G045070.4	Barley	nucleus	38.27	23.58
Solyc12g014170.1.1	Tomato	nucleus	42.09	23.54
Zm00001d016131_P006	Maize	nucleus	40.05	23.4
PGSC0003DMT400039787	Potato	nucleus	41.33	23.01
OQU84709	Sorghum	nucleus	40.82	22.47
Bra015485.1-P	Field mustard	nucleus	42.09	22.03
PGSC0003DMT400032373	Potato	nucleus	41.33	21.86
Bra030643.1-P	Field mustard	nucleus	40.05	21.24
Solyc07g062660.2.1	Tomato	nucleus	39.54	20.61
Zm00001d053427_P007	Maize	nucleus	35.46	20.35
Bra005383.1-P	Field mustard	nucleus	19.64	20.0
Bra012810.1-P	Field mustard	cytosol	17.6	19.38
Zm00001d039369_P004	Maize	plastid	39.29	16.44
Bra025262.1-P	Field mustard	nucleus	22.45	16.27
Bra039088.1-P	Field mustard	nucleus	25.77	15.51
Bra022044.1-P	Field mustard	nucleus	19.13	14.29
Bra034451.1-P	Field mustard	cytosol	18.37	13.64
Bra035848.1-P	Field mustard	nucleus	23.47	7.72

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra008074	EnsemblPlants:Bra008074.1	EnsemblPlants:Bra008074.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4CV29	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002545595	SEG:seg

Description

AT1G73150 (E=5e-049) GTE3 | GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3); DNA binding / histone binding

Coordinates

chrA02:-:13007023..13008449

Molecular Weight (calculated)

43827.9 Da

IEP (calculated)

6.305

GRAVY (calculated)

-0.608

Length

392 amino acids

Sequence
(BLAST)

001: MASGALVSKA KHKRSEISNK RLKPTTAVRP VSPSHSEMRK ITLNSISKLQ VRDLKRKLTA ELEKVRSLIN RLEPVPNKGG QGKAQILKSC NSLLTKLMKH
101: KFGWIFNTPV DAVKSGLHDY HTIVKKPMDL GTVKTRLSKS WYESPLEFAD DVRLTFNNAL LYNPVGHDVH RMAQFLLNMF EDKWAPLETQ CASLYNTHHY
201: VEPLPLQAPP PVVVENRTLE RAESMTNPVE PLALTVSPEK CEEEEASGNR DLTFEEKRRL SEDLQDLPFD KLEEVVEIIK KTKPELAQQD DEIELDIDSL
301: DLQTLWELYR FVIGYKESLS NKKEEQRLGS ERDVESVQEP NTLVTGPEST KVTELGHVAS PAQQVNAGVS SSSSSGSGSS SDSDSDSSGH GS

Best Arabidopsis Sequence Match ( AT1G73150.1 )
(BLAST)

001: MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGHVAS TVRQEVNVGG SSSSNSSSSG SGSGSSGSDS DSSGHESDTG N

Arabidopsis Description

GTE3Transcription factor GTE3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.