Factsheet for Bra012810.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90608	Canola	cytosol	98.03	98.03
CDY29075	Canola	cytoskeleton, cytosol, nucleus	94.66	92.58
AT3G52280.2	Thale cress	nucleus	78.65	72.54
Solyc09g015660.2.1	Tomato	cytosol	54.21	53.46
KRH04734	Soybean	nucleus	56.18	52.77
VIT_13s0019g03950.t01	Wine grape	nucleus	51.69	47.67
EER87804	Sorghum	nucleus	42.98	44.22
TraesCS1B01G385900.1	Wheat	cytosol	42.13	43.86
TraesCS1A01G367300.1	Wheat	cytosol	42.7	43.55
TraesCS1D01G373000.1	Wheat	cytosol	42.7	42.34
TraesCS7A01G080900.1	Wheat	nucleus	41.57	42.17
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	42.98	41.92
TraesCS7D01G074500.1	Wheat	cytosol	41.29	41.88
TraesCS4A01G377900.2	Wheat	cytosol	41.29	41.88
HORVU5Hr1G097840.6	Barley	cytosol	41.01	41.71
GSMUA_Achr8P29340_001	Banana	nucleus	45.51	41.43
HORVU7Hr1G018300.6	Barley	cytosol	40.45	40.91
Os06t0138000-01	Rice	cytosol, nucleus	14.04	40.32
Bra005383.1-P	Field mustard	nucleus	40.45	37.4
GSMUA_Achr8P34430_001	Banana	nucleus	37.36	30.93
Bra034451.1-P	Field mustard	cytosol	37.08	25.0
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.51	20.56
Bra008074.1-P	Field mustard	nucleus, plastid	19.38	17.6
Bra016586.1-P	Field mustard	nucleus, plastid	21.07	17.05
Bra025948.1-P	Field mustard	mitochondrion	19.38	16.67
Bra005311.1-P	Field mustard	cytosol, plastid	9.83	15.02
Bra038624.1-P	Field mustard	nucleus	9.55	14.05
Bra006068.1-P	Field mustard	nucleus	18.82	12.2
Bra024402.1-P	Field mustard	nucleus, plastid	17.98	11.74
Bra032431.1-P	Field mustard	nucleus	21.63	11.72
Bra022044.1-P	Field mustard	nucleus	16.85	11.43
Bra025262.1-P	Field mustard	nucleus	16.57	10.91
Bra030643.1-P	Field mustard	nucleus	21.35	10.28
Bra039088.1-P	Field mustard	nucleus	18.26	9.98
Bra015485.1-P	Field mustard	nucleus	20.79	9.88
Bra035848.1-P	Field mustard	nucleus	15.17	4.53

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra012810	EnsemblPlants:Bra012810.1	EnsemblPlants:Bra012810.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538
InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4D8K0
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000254076A
SEG:seg	:	:	:	:	:

Description

AT3G52280 (E=2e-137) GTE6 | GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6); DNA binding / H3/H4 histone acetyltransferase

Coordinates

chrA03:-:22111262..22112950

Molecular Weight (calculated)

41212.2 Da

IEP (calculated)

5.754

GRAVY (calculated)

-0.625

Length

356 amino acids

Sequence
(BLAST)

001: MAESVPVSSD IPAGESKILP VEAETIKQRV EEVVQWVDSL EHKLTEVENF YSTIAVSNSS PRHVVEIRKV QQEAARREAV AAKRMHDLMR QFGTIFRQIT
101: QHKCAWPFMH PVDVESLGLD DYYEVIDEPM DFSTIKNQME AKDGTGYKHV MQIYADMRLV FENAMKYNED ASDVYSMAKT LLQKFEEKWA HFLPKVQEEE
201: KIREEEEKQA AMEALLAKEA SHTKTTRDLS NEICNVNDEL EKLRNVVVGR CRKITSEEKR NIGFALLKLS TDELQKVLGI VAQADPRFQT RAEEVTIEMD
301: VLDEPTLWRL KFFVKDALEN AKKKEETIRT KQNNEVSNKR NAVNKLAERR TKRTCL

Best Arabidopsis Sequence Match ( AT3G52280.1 )
(BLAST)

001: MADSVPGHVA GGGLQGFSVD AECIKQRVDE VLQWVDSLEH KLKEVEEFYS SIGVSNSGSI GKDTEKGRHV VGIRKIQQEA ARREAVAAKR MQDLMRQFGT
101: IFRQITQHKC AWPFMHPVNV EGLGLHDYFE VIDKPMDFST IKNQMEAKDG TGYKHVMQIY ADMRLVFENA MNYNEETSDV YSMAKKLLEK FEEKWAHFLP
201: KVQEEEKIRE EEEKQAAKEA LLAKEASHIK TTRELGNEIC HANDELEKLM RKVVERCRKI TIEEKRNIGL ALLKLSPDDL QKVLGIVAQA NPSFQPRAEE
301: VSIEMDILDE PTLWRLKFFV KDALDNAMKK KKEEETKTRE LSGAQKKEVS KKRNATTKLA ERKTKRSRI

Arabidopsis Description

GTE6General transcription factor group E6 [Source:UniProtKB/TrEMBL;Acc:F4J6V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.