Factsheet for AT3G52280.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012810.1-P	Field mustard	cytosol	72.54	78.65
CDX90608	Canola	cytosol	72.28	78.37
CDY29075	Canola	cytoskeleton, cytosol, nucleus	73.32	77.75
Solyc09g015660.2.1	Tomato	cytosol	50.0	53.46
KRH04734	Soybean	nucleus	52.07	53.03
VIT_13s0019g03950.t01	Wine grape	nucleus	49.48	49.48
EER87804	Sorghum	nucleus	39.12	43.64
TraesCS1B01G385900.1	Wheat	cytosol	38.6	43.57
TraesCS1A01G367300.1	Wheat	cytosol	39.12	43.27
GSMUA_Achr8P29340_001	Banana	nucleus	43.26	42.71
TraesCS1D01G373000.1	Wheat	cytosol	39.38	42.34
TraesCS7A01G080900.1	Wheat	nucleus	38.08	41.88
TraesCS7D01G074500.1	Wheat	cytosol	37.82	41.6
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	39.12	41.37
TraesCS4A01G377900.2	Wheat	cytosol	37.56	41.31
HORVU5Hr1G097840.6	Barley	cytosol	37.31	41.14
Os06t0138000-01	Rice	cytosol, nucleus	12.95	40.32
AT2G34900.1	Thale cress	nucleus	40.16	40.16
HORVU7Hr1G018300.6	Barley	cytosol	36.53	40.06
GSMUA_Achr8P34430_001	Banana	nucleus	34.97	31.4
AT1G73150.1	Thale cress	plastid	20.98	17.57
AT1G17790.1	Thale cress	nucleus, plastid	20.98	16.63
AT5G10550.1	Thale cress	nucleus	20.98	13.94
AT5G65630.1	Thale cress	nucleus	18.91	12.37
AT1G06230.2	Thale cress	nucleus	22.28	11.23
AT5G46550.1	Thale cress	cytosol	13.73	10.73
AT5G14270.2	Thale cress	nucleus	18.13	10.16
AT3G01770.1	Thale cress	nucleus	15.8	9.84
AT3G27260.3	Thale cress	nucleus	17.36	8.15
AT5G63320.1	Thale cress	nucleus	17.36	6.31

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EntrezGene:824393	ProteinID:AEE78926.1	ArrayExpress:AT3G52280
EnsemblPlantsGene:AT3G52280	RefSeq:AT3G52280	TAIR:AT3G52280	RefSeq:AT3G52280-TAIR-G	EnsemblPlants:AT3G52280.2	TAIR:AT3G52280.2
Unigene:At.35311	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	UniProt:F4J6V6	GO:GO:0003674
GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573
GO:GO:0016740	GO:GO:0019538	InterPro:GTE1/GTE6	Symbol:GTE6	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	RefSeq:NP_001190072.1	PFAM:PF00439
PFAM:PF17035	PIRSF:PIRSF038154	PO:PO:0000293	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0001E92E93	SEG:seg

Description

GTE6General transcription factor group E6 [Source:UniProtKB/TrEMBL;Acc:F4J6V6]

Coordinates

chr3:-:19389047..19391383

Molecular Weight (calculated)

44385.5 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.618

Length

386 amino acids

Sequence
(BLAST)

001: MADSVPGHVA GGGLQGFSVD AECIKQRVDE GFSLNNVVYR VLNLGIFVLH RYELLEHKLK EVEEFYSSIG VSNSGSIGKD TEKGRHVVGI RKIQQEAARR
101: EAVAAKRMQD LMRQFGTIFR QITQHKCAWP FMHPVNVEGL GLHDYFEVID KPMDFSTIKN QMEAKDGTGY KHVMQIYADM RLVFENAMNY NEETSDVYSM
201: AKKLLEKFEE KWAHFLPKVQ EEEKIREEEE KQAAKEALLA KEASHIKTTR ELGNEICHAN DELEKLMRKV VERCRKITIE EKRNIGLALL KLSPDDLQKV
301: LGIVAQANPS FQPRAEEVSI EMDILDEPTL WRLKFFVKDA LDNAMKKKKE EETKTRELSG AQKKEVSKKR NATTKLAERK TKRSRI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.