Factsheet for Bra031004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21732	Canola	cytosol	70.99	99.21
Bra025948.1-P	Field mustard	mitochondrion	67.32	57.73
Bra016586.1-P	Field mustard	nucleus, plastid	67.04	54.09
AT1G17790.1	Thale cress	nucleus, plastid	69.3	50.51
Bra008074.1-P	Field mustard	nucleus, plastid	54.65	49.49
GSMUA_Achr11P...	Banana	nucleus	39.72	33.33
EES02258	Sorghum	plastid	39.44	31.39
GSMUA_Achr10P...	Banana	nucleus, plastid	38.87	30.87
Zm00001d008922_P001	Maize	plastid	39.72	28.78
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	40.28	27.82
TraesCS3D01G146600.1	Wheat	nucleus, plastid	39.44	27.67
TraesCS3A01G140500.1	Wheat	nucleus, plastid	39.44	27.45
TraesCS3B01G164100.1	Wheat	nucleus, plastid	39.15	27.25
GSMUA_Achr1P11660_001	Banana	nucleus	37.18	25.73
Bra038624.1-P	Field mustard	nucleus	16.62	24.38
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	20.85	23.79
VIT_19s0014g01650.t01	Wine grape	nucleus	40.0	23.79
Bra005311.1-P	Field mustard	cytosol, plastid	14.65	22.32
HORVU6Hr1G045030.1	Barley	nucleus	38.87	21.8
TraesCS6D01G177700.1	Wheat	cytosol, plastid	38.87	21.73
HORVU6Hr1G045070.4	Barley	nucleus	38.87	21.7
Os02t0250300-01	Rice	nucleus	38.87	21.04
Zm00001d016131_P006	Maize	nucleus	38.87	20.57
Bra012810.1-P	Field mustard	cytosol	20.56	20.51
Os01t0214300-01	Rice	cytosol, nucleus	9.58	20.48
Zm00001d053427_P007	Maize	nucleus	39.15	20.35
Bra006068.1-P	Field mustard	nucleus	31.27	20.22
Bra024402.1-P	Field mustard	nucleus, plastid	30.99	20.18
OQU84709	Sorghum	nucleus	39.72	19.8
Bra005383.1-P	Field mustard	nucleus	21.41	19.74
Bra032431.1-P	Field mustard	nucleus	36.34	19.63
PGSC0003DMT400032373	Potato	nucleus	40.0	19.16
Solyc12g014170.1.1	Tomato	nucleus	37.75	19.12
PGSC0003DMT400039787	Potato	nucleus	37.75	19.03
Solyc07g062660.2.1	Tomato	nucleus	39.15	18.48
Bra030643.1-P	Field mustard	nucleus	37.18	17.86
Bra015485.1-P	Field mustard	nucleus	37.18	17.62
Zm00001d039369_P004	Maize	plastid	40.56	15.37
Bra025262.1-P	Field mustard	nucleus	22.82	14.97
Bra039088.1-P	Field mustard	nucleus	25.92	14.13
Bra022044.1-P	Field mustard	nucleus	20.0	13.52
Bra034451.1-P	Field mustard	cytosol	19.72	13.26
Bra035848.1-P	Field mustard	nucleus	22.54	6.72

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	EnsemblPlantsGene:Bra031004	EnsemblPlants:Bra031004.1	EnsemblPlants:Bra031004.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487
InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M4EQD3	InterPro:NET_dom	InterPro:NET_sf
PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880
PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002542AE8	SEG:seg	:

Description

AT1G17790 (E=3e-050) | DNA-binding bromodomain-containing protein

Coordinates

chrA09:+:32973031..32974330

Molecular Weight (calculated)

40199.9 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.377

Length

355 amino acids

Sequence
(BLAST)

001: MVAARHDRPV NVPLVSPSHS FASEDEDPMS KVVSLSSTSK REVKNLKLKL ISEVDKVRIV ITRFDPQGGN KKIETVKKSG HGGTVHIFRN CNNLLRKLMT
101: HKYGWVFNVP VDAEGLCLRD YHTIVKEPMD LGTVKSKLGE GLYNSPLDFA EDVRLTFNNA ILYNPMGNDV HSMAKFLLSM FEEKWVSIEV QLDSLPIVDP
201: LPAPTVLKDR TLERVESMTT PVETPVDNRD LTLDEKRRLI EELQDLPCDK LETVVQIIKK SNPELSQQDD DEIELDIDSL DIQTLWELYR FVTGYKESLN
301: NRKEDQGFGS ERDAESAHNI IQEPAGSFTL SGSQLTSLFF FDLQILTVIA PRDVD

Best Arabidopsis Sequence Match ( AT1G17790.1 )
(BLAST)

001: MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA
101: KSGVVGRSKK VKTGNGGGKK SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK TKLGKSLYKS PLDFAEDVRL
201: TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
301: SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK
401: NEAHGFGSER DAESVHNSIQ EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG RGSDNGN

Arabidopsis Description

GTE5Transcription factor GTE5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.