Factsheet for PGSC0003DMT400061991

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061998	Potato	cytosol	26.05	69.23
PGSC0003DMT400039787	Potato	nucleus	84.89	37.5
Solyc12g014170.1.1	Tomato	nucleus	81.67	36.23
Os01t0214300-01	Rice	cytosol, nucleus	19.29	36.14
CDY66497	Canola	nucleus	17.04	34.19
CDY26219	Canola	nucleus	18.33	30.65
CDX96751	Canola	nucleus, plastid	34.08	28.96
CDX83890	Canola	nucleus, plastid	34.08	28.96
GSMUA_Achr10P...	Banana	nucleus, plastid	40.84	28.41
CDY19175	Canola	nucleus, plastid	33.12	26.82
CDX82101	Canola	nucleus	15.11	25.68
VIT_19s0014g01650.t01	Wine grape	nucleus	48.87	25.46
PGSC0003DMT400032373	Potato	nucleus	59.81	25.1
GSMUA_Achr11P...	Banana	nucleus	33.76	24.82
CDY48040	Canola	nucleus, plastid	31.19	24.74
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	40.84	24.71
Bra008074.1-P	Field mustard	nucleus, plastid	30.87	24.49
CDY26215	Canola	mitochondrion	32.48	24.4
Bra025948.1-P	Field mustard	mitochondrion	32.48	24.4
GSMUA_Achr1P11660_001	Banana	nucleus	39.87	24.17
CDX82103	Canola	plastid	24.12	23.96
Bra016586.1-P	Field mustard	nucleus, plastid	33.76	23.86
AT1G73150.1	Thale cress	plastid	34.41	23.21
Zm00001d008922_P001	Maize	plastid	35.69	22.65
PGSC0003DMT400027387	Potato	nucleus	41.48	22.4
TraesCS3D01G146600.1	Wheat	nucleus, plastid	36.33	22.33
TraesCS3B01G164100.1	Wheat	nucleus, plastid	36.33	22.16
TraesCS3A01G140500.1	Wheat	nucleus, plastid	36.33	22.16
AT1G17790.1	Thale cress	nucleus, plastid	33.76	21.56
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.79	20.85
EES02258	Sorghum	plastid	27.65	19.28
Os02t0250300-01	Rice	nucleus	39.55	18.75
Zm00001d016131_P006	Maize	nucleus	40.19	18.63
TraesCS6D01G177700.1	Wheat	cytosol, plastid	37.94	18.58
HORVU6Hr1G045070.4	Barley	nucleus	37.94	18.55
HORVU6Hr1G045030.1	Barley	nucleus	37.62	18.48
OQU84709	Sorghum	nucleus	40.51	17.7
CDX81848	Canola	cytosol, nucleus, plastid	14.79	16.73
PGSC0003DMT400008041	Potato	nucleus	32.15	16.61
CDY21732	Canola	cytosol	12.86	15.75
Zm00001d053427_P007	Maize	nucleus	32.8	14.93
PGSC0003DMT400078795	Potato	nucleus	24.12	12.67
PGSC0003DMT400044321	Potato	nucleus	14.79	12.2
Zm00001d039369_P004	Maize	plastid	32.8	10.89
PGSC0003DMT400039290	Potato	nucleus	26.37	10.43
PGSC0003DMT400052108	Potato	nucleus	21.22	9.05
PGSC0003DMT400018643	Potato	nucleus	17.04	8.75

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	UniProt:M1C8C2
InterPro:NET_dom	PFAM:PF00439	PFAM:PF17035	EnsemblPlantsGene:PGSC0003DMG400024125	PGSC:PGSC0003DMG400024125	EnsemblPlants:PGSC0003DMT400061991
PRINTS:PR00503	PFscan:PS50014	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI000296756F	SEG:seg	:	:	:	:

Description

Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024125]

Coordinates

chr1:-:15307524..15309001

Molecular Weight (calculated)

34427.1 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.695

Length

311 amino acids

Sequence
(BLAST)

001: MASYTDGLNR EHAELDSTVK PVISRVRDRI RINIGGATSR VEIRGIMRDL VGELDQIRSS VTELEAKDLQ LTTHDTNTNG CYNNIGRITA IPTGAVNSYS
101: QPRYIDNDVT NSRALVRVNL ERLMKHKHRW VFDEPVNVEG LGLHDYHAII KHPMDLGTIK ARLSQNLYKS PREFAEDIIK KKNSTFYQHD DEIEVDIDNV
201: DAESFWELER FVTNYKKNLS KQKRKDELAL QARGTARTAP VMNSAPMVAG ALNSNTGKNN TSALATNAEA GRQMDNARRS LSSSSSSSDS GSSPSDSDCD
301: SSSGSGSKVG H

Best Arabidopsis Sequence Match ( AT1G06230.1 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.