Factsheet for GSMUA_Achr10P27900_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	82.1	71.4
GSMUA_Achr11P...	Banana	nucleus	64.43	68.09
CDY15568	Canola	nucleus	37.81	53.31
CDY66497	Canola	nucleus	16.78	48.39
CDX96751	Canola	nucleus, plastid	38.26	46.72
CDX83890	Canola	nucleus, plastid	38.03	46.45
GSMUA_Achr1P11660_001	Banana	nucleus	51.01	44.44
CDY19175	Canola	nucleus, plastid	37.58	43.75
VIT_19s0014g01650.t01	Wine grape	nucleus	58.17	43.55
CDY26219	Canola	nucleus	18.12	43.55
CDX82101	Canola	nucleus	17.23	42.08
CDX82103	Canola	plastid	29.31	41.85
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	28.41	40.84
Bra016586.1-P	Field mustard	nucleus, plastid	40.04	40.68
PGSC0003DMT400027387	Potato	nucleus	52.35	40.62
CDY48040	Canola	nucleus, plastid	35.57	40.56
Bra008074.1-P	Field mustard	nucleus, plastid	35.35	40.31
Bra025948.1-P	Field mustard	mitochondrion	37.14	40.1
CDY26215	Canola	mitochondrion	36.91	39.86
KRH22304	Soybean	nucleus	56.82	39.69
KRH27020	Soybean	nucleus	57.27	39.63
VIT_12s0028g02510.t01	Wine grape	nucleus	57.94	39.6
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	30.87	38.87
AT1G73150.1	Thale cress	plastid	39.37	38.18
Solyc10g008070.2.1	Tomato	nucleus	30.65	37.85
AT1G17790.1	Thale cress	nucleus, plastid	39.6	36.34
CDY21732	Canola	cytosol	20.13	35.43
CDY06203	Canola	nucleus	48.55	33.7
CDY09981	Canola	nucleus	47.2	33.02
Bra032431.1-P	Field mustard	nucleus	47.87	32.57
GSMUA_Achr1P15650_001	Banana	nucleus	35.12	31.91
PGSC0003DMT400032373	Potato	nucleus	52.8	31.85
GSMUA_Achr3P00480_001	Banana	nucleus	37.14	31.8
Solyc12g014170.1.1	Tomato	nucleus	49.44	31.53
PGSC0003DMT400039787	Potato	nucleus	49.22	31.25
CDX86532	Canola	nucleus	48.55	30.78
Solyc07g062660.2.1	Tomato	nucleus	50.78	30.19
Bra030643.1-P	Field mustard	nucleus	48.99	29.63
Bra015485.1-P	Field mustard	nucleus	49.44	29.51
AT1G06230.2	Thale cress	nucleus	49.22	28.72
KRH25703	Soybean	nucleus	55.48	28.38
CDX81848	Canola	cytosol, nucleus, plastid	15.88	25.82
KRH55813	Soybean	nucleus	55.7	25.28
CDY72432	Canola	cytosol	25.73	22.77
GSMUA_Achr8P29340_001	Banana	nucleus	19.91	22.76
CDY68605	Canola	cytosol	27.29	22.22
GSMUA_Achr8P08920_001	Banana	nucleus	28.86	19.85
GSMUA_Achr10P...	Banana	nucleus	27.74	19.44
GSMUA_Achr8P34430_001	Banana	nucleus	17.45	18.14
GSMUA_Achr8P01140_001	Banana	nucleus	29.98	17.84
GSMUA_Achr2P20970_001	Banana	nucleus	27.29	16.94
GSMUA_Achr3P02670_001	Banana	nucleus	25.06	15.89
GSMUA_Achr3P02660_001	Banana	plasma membrane	22.6	15.44
GSMUA_Achr4P27780_001	Banana	nucleus	19.69	13.06

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G27900_001	EnsemblPlants:GSMUA_Achr10P27900_001	EnsemblPlants:GSMUA_Achr10T27900_001
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0RM14
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002966CF5
SEG:seg	:	:	:	:	:

Description

Putative Bromodomain-containing protein GTE3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G27900_001]

Coordinates

chr10:+:30852515..30858302

Molecular Weight (calculated)

49603.1 Da

IEP (calculated)

8.436

GRAVY (calculated)

-0.808

Length

447 amino acids

Sequence
(BLAST)

001: MASAPPPGGG KVYTRKSLNK AAKPAFHPRP PPPPHDDLDS PRRHPPPHPV ASDDASSGPN RPSARPPLAN GRGSLGRSVA SRSRKEAREL RRKLAAELDQ
101: VRALSKRLEA HELQLASAAG YTRSQLSANQ YYRNSDFAFK SCSTLLSRLM KHKHGWVFNV PVDVKALGLH DYYSIIKCPM DLGTVKSRLA DDCYNSPHEF
201: AEDVRLTFWN AMTYNLKGQD VHAMADQLLQ IFEERWLAIE AEFAHLPRPP ITKKPPPLDL RMLERSDSTK PKAKDPNKRD MTFEEKQKLS NSLQNLPPEK
301: LESIVQIIKK RNSSLSQHDD EIEVDIDSVD VETLWELDRF ITNYKKALSK NKRKAELATS VRQAAGHNAP EVVHTMTQEP VDADEPEKMV DEKYVASSSP
401: VGGEKEGENA IRTSSSSSDS GSSSSDSDSE SSSAYGSDAP LSHSPRT

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.