CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55813	Soybean	nucleus	90.62	80.41
KRH22304	Soybean	nucleus	52.52	71.72
KRH27020	Soybean	nucleus	52.52	71.05
CDY15568	Canola	nucleus	23.34	64.35
Solyc10g008070.2.1	Tomato	nucleus	23.91	57.73
VIT_12s0028g02510.t01	Wine grape	nucleus	43.13	57.65
PGSC0003DMT400027387	Potato	nucleus	36.73	55.73
GSMUA_Achr10P...	Banana	nucleus, plastid	28.38	55.48
GSMUA_Achr11P...	Banana	nucleus	26.43	54.61
CDY06203	Canola	nucleus	39.82	54.04
CDY09981	Canola	nucleus	38.56	52.74
Bra032431.1-P	Field mustard	nucleus	39.24	52.21
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	29.75	50.58
CDX86532	Canola	nucleus	39.93	49.5
Bra015485.1-P	Field mustard	nucleus	42.22	49.27
Os01t0214300-01	Rice	cytosol, nucleus	9.27	48.8
AT1G06230.2	Thale cress	nucleus	42.45	48.43
Zm00001d008922_P001	Maize	plastid	27.12	48.37
Bra030643.1-P	Field mustard	nucleus	40.5	47.9
TraesCS3D01G146600.1	Wheat	nucleus, plastid	26.77	46.25
TraesCS3B01G164100.1	Wheat	nucleus, plastid	26.77	45.88
TraesCS3A01G140500.1	Wheat	nucleus, plastid	26.77	45.88
EES02258	Sorghum	plastid	23.0	45.07
CDY72432	Canola	cytosol	25.74	44.55
CDY68605	Canola	cytosol	27.92	44.44
GSMUA_Achr1P11660_001	Banana	nucleus	25.97	44.25
Os02t0250300-01	Rice	nucleus	32.49	43.29
HORVU6Hr1G045030.1	Barley	nucleus	30.55	42.18
HORVU6Hr1G045070.4	Barley	nucleus	30.66	42.14
Zm00001d016131_P006	Maize	nucleus	32.04	41.73
TraesCS6D01G177700.1	Wheat	cytosol, plastid	30.21	41.57
OQU84709	Sorghum	nucleus	33.07	40.59
Zm00001d053427_P007	Maize	nucleus	28.6	36.6
KRH10646	Soybean	nucleus	21.62	35.73
KRH21702	Soybean	nucleus	21.17	34.84
KRH10648	Soybean	nucleus	20.82	33.96
KRH45305	Soybean	nucleus	10.64	25.34
KRH37141	Soybean	cytosol, nucleus	7.89	25.27
KRH12139	Soybean	nucleus	9.84	24.64
KRH04734	Soybean	nucleus	10.18	23.48
Zm00001d039369_P004	Maize	plastid	24.83	23.16
KRH54219	Soybean	nucleus	20.48	22.72
KRH63729	Soybean	nucleus	20.02	22.35
KRH57199	Soybean	nucleus	18.65	22.06
KRH07021	Soybean	nucleus	16.36	19.22
KRG94435	Soybean	nucleus	15.9	18.73
KRH21136	Soybean	nucleus	11.67	18.02
KRH07022	Soybean	nucleus	15.79	17.56
KRH11112	Soybean	nucleus	11.21	17.35

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100817007	MapMan:15.5.54	EMBL:ACUP02007320	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G122100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:K7LUD5
EnsemblPlants:KRH25703	ProteinID:KRH25703	ProteinID:KRH25703.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF225
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000233CD5F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:13265783..13269229

Molecular Weight (calculated)

96348.7 Da

IEP (calculated)

5.400

GRAVY (calculated)

-0.951

Length

874 amino acids

Sequence
(BLAST)

001: MASEPMVGGD DEAREKQRFG ERKVYTRRKV KKDPNAVAST TENNGTATST VTNDNSVSNS TVQKSNTGEA AEAKSKGDNV STQALAQPVV LPEDGNLAQP
101: QVVSGLEDGN LGQPQLEDQN MVQTEVGSGL EDGNKAQPRG EDQNMAQTQE GSRLENENRA QPQGEDQNLA QTQVNSRLED GDTAQLQLED QNMVQSQSED
201: QNMVQPQSED QNMVHPQSED QNMAQPQSED QNTAQPRLGD QNTAQLQGNS KLEDENMAQP QVSSRSEDAN TAQPQVSSKL GGRKSPQPEV NSRLEDGNLP
301: RPRVNSSLDG NTVQPLVVLV SDDSCSRQPD EPSNLNVQLQ DDGPSSPIHQ QEAVPSSRDL TLGNGVVEPQ WRDRIKINLA SKSKQQMREL RWKLERELGI
401: VRCLVNRIEV KQRPVGGYGN SNVLIDSGIN NVGGAKRAHS EVASAGVPRE PASTRPLHQL SLSMLENSQG ICETVEKEKR TPKANQFYRN SEFLLAKDKF
501: PPAESNKKSK LNWKKQGGGE MGHGFGMGSK FFKSCSSLLE KLMKHKHGWV FNAPVDVEAL GLHDYFTIIT HPMDLGTVKS RLNKNWYKSP KEFAEDVRLT
601: FRNAMTYNPP GQDVHIMAEQ LSKIFEDRWA IIESDYNREM RYGFDYGAVA PALSPLSRRV SAFTPPPLDM RRILNRSESM TQTPRLMSIT PSSRTPAPKK
701: PKAKDPHKRD MTFEEKQKLS TNLQSLPSEK LDAIVQIIKK RNSALNQHDD EIEVDIDSVD AETLWELDRF VTNYKKSLSK NKRKAELAQA RAEALQQNAI
801: QKSQAPAMAE IPKETLTDER NLPQPLPAQR GNQADNGSRS SSSSSSSSDS GSSSSDSDSD SSSASGSEAG SQGT

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.