Factsheet for Solyc10g008070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027387	Potato	nucleus	96.69	60.76
Os01t0214300-01	Rice	cytosol, nucleus	19.89	43.37
KRH22304	Soybean	nucleus	60.22	34.06
KRH27020	Soybean	nucleus	59.39	33.28
VIT_12s0028g02510.t01	Wine grape	nucleus	57.46	31.8
GSMUA_Achr10P...	Banana	nucleus, plastid	37.85	30.65
CDY15568	Canola	nucleus	26.8	30.6
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	40.88	28.79
CDY09981	Canola	nucleus	50.55	28.64
CDY06203	Canola	nucleus	49.72	27.95
TraesCS3D01G146600.1	Wheat	nucleus, plastid	38.4	27.47
TraesCS3A01G140500.1	Wheat	nucleus, plastid	38.4	27.25
TraesCS3B01G164100.1	Wheat	nucleus, plastid	38.4	27.25
Bra032431.1-P	Field mustard	nucleus	49.45	27.25
Zm00001d008922_P001	Maize	plastid	35.91	26.53
GSMUA_Achr11P...	Banana	nucleus	30.94	26.48
CDX86532	Canola	nucleus	49.72	25.53
Bra015485.1-P	Field mustard	nucleus	51.1	24.7
Solyc12g014170.1.1	Tomato	nucleus	47.51	24.54
Bra030643.1-P	Field mustard	nucleus	50.0	24.49
Os02t0250300-01	Rice	nucleus	43.92	24.24
KRH25703	Soybean	nucleus	57.73	23.91
HORVU6Hr1G045030.1	Barley	nucleus	41.44	23.7
AT1G06230.2	Thale cress	nucleus	50.0	23.63
HORVU6Hr1G045070.4	Barley	nucleus	41.44	23.58
TraesCS6D01G177700.1	Wheat	cytosol, plastid	40.88	23.31
EES02258	Sorghum	plastid	28.45	23.09
Zm00001d016131_P006	Maize	nucleus	42.54	22.95
GSMUA_Achr1P11660_001	Banana	nucleus	32.32	22.81
OQU84709	Sorghum	nucleus	44.75	22.75
Solyc07g062660.2.1	Tomato	nucleus	46.96	22.61
KRH55813	Soybean	nucleus	57.46	21.12
Zm00001d053427_P007	Maize	nucleus	37.02	19.62
Solyc01g106280.2.1	Tomato	nucleus	28.45	17.11
CDY72432	Canola	cytosol	22.1	15.84
CDY68605	Canola	cytosol	23.2	15.3
Solyc02g091660.2.1	Tomato	nucleus	22.1	14.95
Zm00001d039369_P004	Maize	plastid	32.32	12.49
Solyc03g111090.2.1	Tomato	nucleus	23.76	11.01
Solyc09g015660.2.1	Tomato	cytosol	9.94	9.97
Solyc09g090370.2.1	Tomato	nucleus	8.84	9.25
Solyc02g071510.2.1	Tomato	nucleus	14.36	8.86
Solyc02g093880.2.1	Tomato	nucleus	16.57	8.28

Protein Annotations

EnsemblPlants:Solyc10g008070.2.1	EnsemblPlantsGene:Solyc10g008070.2	Gene3D:1.20.1270.220	InterPro:IPR027353	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	ncoils:Coil	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	PFAM:PF17035	PFscan:PS51525
SEG:seg	UniParc:UPI000276B5D3	UniProt:K4CXY4	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr10:-:2219846..2222728

Molecular Weight (calculated)

40381.3 Da

IEP (calculated)

9.632

GRAVY (calculated)

-1.047

Length

362 amino acids

Sequence
(BLAST)

001: MTESKVYRRK SFKGLNSIGD GLQHSHSEIL GSGQENSARI NLTFKSKREM REIRRKLQSE LDLVRSLVMK IEAKDVQKTG PGIDKDSGVR RVHSDVSKMG
101: QHLESRPLNQ LSVSVLENSH GVGENLEKEK RTPKVNQFYR NSEFLLAKDK IPPAESNKKS KSNAKKVSGP ESGPGIELVK FSNQMIPAPK KPKAKDPNKR
201: EMTYDEKQKL STSLQNLPSE KLENVVQIIK KRNSSLCQQD DEIEVDIDSV DTETLWELDR FVIYYKKSLS KNKRKTELAD QEKKETEQNV QEKNANPVVV
301: EIPKESKAEE KGTPSNLAQL ENQGKNISQP GSSSTDSVSS SSDSDSESSS GGGSDAEHSP KS

Best Arabidopsis Sequence Match ( AT1G06230.1 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.