Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g111710.2.1 | |
| Solyc06g071820.2.1 | |
| Solyc06g071830.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400052108 | Potato | nucleus | 93.66 | 93.14 |
| VIT_14s0171g00380.t01 | Wine grape | nucleus | 58.76 | 57.8 |
| KRH07021 | Soybean | nucleus | 57.24 | 55.78 |
| KRG94435 | Soybean | nucleus | 56.14 | 54.85 |
| Bra025262.1-P | Field mustard | nucleus | 40.55 | 54.34 |
| CDY13699 | Canola | nucleus | 32.41 | 51.42 |
| KRH07022 | Soybean | nucleus | 53.79 | 49.62 |
| Bra039088.1-P | Field mustard | nucleus | 44.28 | 49.31 |
| CDY20057 | Canola | nucleus | 43.72 | 49.15 |
| CDX83673 | Canola | nucleus | 32.41 | 47.19 |
| AT5G14270.2 | Thale cress | nucleus | 43.59 | 45.86 |
| AT3G01770.1 | Thale cress | nucleus | 39.17 | 45.81 |
| Solyc03g111090.2.1 | Tomato | nucleus | 49.24 | 45.71 |
| GSMUA_Achr8P01140_001 | Banana | nucleus | 46.76 | 45.14 |
| GSMUA_Achr2P20970_001 | Banana | nucleus | 43.72 | 44.03 |
| GSMUA_Achr8P08920_001 | Banana | nucleus | 38.9 | 43.38 |
| AT3G27260.3 | Thale cress | nucleus | 48.0 | 42.34 |
| GSMUA_Achr10P... | Banana | nucleus | 36.69 | 41.69 |
| GSMUA_Achr3P02660_001 | Banana | plasma membrane | 36.83 | 40.83 |
| TraesCS7D01G309100.1 | Wheat | nucleus | 41.24 | 39.87 |
| TraesCS7A01G312700.2 | Wheat | nucleus | 41.1 | 39.73 |
| TraesCS3A01G087800.1 | Wheat | plastid | 33.38 | 39.67 |
| TraesCS7B01G212400.2 | Wheat | nucleus | 40.55 | 39.2 |
| TraesCS6D01G196600.3 | Wheat | nucleus | 37.93 | 39.12 |
| Os02t0601800-03 | Rice | nucleus | 38.48 | 39.08 |
| TraesCS6A01G214000.1 | Wheat | nucleus | 37.93 | 38.95 |
| KXG24325 | Sorghum | nucleus | 37.93 | 38.84 |
| TraesCS6B01G244000.2 | Wheat | plastid | 37.93 | 38.19 |
| HORVU6Hr1G054560.16 | Barley | nucleus | 37.52 | 38.04 |
| EES07108 | Sorghum | nucleus | 37.1 | 37.83 |
| TraesCS3B01G103200.2 | Wheat | nucleus | 37.24 | 37.76 |
| HORVU7Hr1G074620.7 | Barley | cytosol, mitochondrion, nucleus | 40.55 | 37.74 |
| Zm00001d035167_P001 | Maize | nucleus | 39.31 | 37.6 |
| TraesCS3D01G087900.4 | Wheat | nucleus | 37.1 | 37.57 |
| TraesCS3B01G141400.2 | Wheat | nucleus, plastid | 36.83 | 37.45 |
| TraesCS3D01G124100.1 | Wheat | nucleus | 36.41 | 37.03 |
| TraesCS3A01G122200.1 | Wheat | nucleus | 36.14 | 36.75 |
| Zm00001d017126_P001 | Maize | nucleus | 35.17 | 36.64 |
| HORVU3Hr1G022660.1 | Barley | nucleus | 35.31 | 35.96 |
| GSMUA_Achr3P02670_001 | Banana | nucleus | 34.76 | 35.74 |
| Zm00001d049638_P009 | Maize | nucleus | 37.52 | 35.01 |
| HORVU3Hr1G015760.1 | Barley | nucleus | 25.24 | 33.15 |
| Solyc02g071510.2.1 | Tomato | nucleus | 25.24 | 31.18 |
| Solyc02g091660.2.1 | Tomato | nucleus | 15.72 | 21.31 |
| Solyc09g015660.2.1 | Tomato | cytosol | 10.48 | 21.05 |
| Solyc09g090370.2.1 | Tomato | nucleus | 9.66 | 20.23 |
| Solyc01g106280.2.1 | Tomato | nucleus | 16.55 | 19.93 |
| Solyc10g008070.2.1 | Tomato | nucleus | 8.28 | 16.57 |
| Solyc12g014170.1.1 | Tomato | nucleus | 16.0 | 16.55 |
| Solyc07g062660.2.1 | Tomato | nucleus | 15.45 | 14.89 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GTE_bromo | InterPro:IPR001487 |
| InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 | UniProt:K4BDI4 | InterPro:NET_dom | InterPro:NET_sf |
| PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS51525 |
| PANTHER:PTHR22880 | PANTHER:PTHR22880:SF228 | SMART:SM00297 | SUPFAM:SSF47370 | EnsemblPlantsGene:Solyc02g093880.2 | EnsemblPlants:Solyc02g093880.2.1 |
| UniParc:UPI00027688C7 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:54573480..54577939
Molecular Weight (calculated)
79991.3 Da
IEP (calculated)
4.857
GRAVY (calculated)
-0.758
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKDKLPGG GSAGFATNYG SEGSGSSGRF DARISVSGHS IAPQQRWINI NSSSHDGFAV PIHVILQSKL SPSERKHLVL QLTSDIEQIR LLQKKVEFYR
101: TSAIAVSSSS DIVSCSNAQK GLPLASKKRS AGNPGFGKKS NPSAQKTRGQ SREVSGRFKS VKPASVPSRS NATLMKQCEN LLKKLLSHRN AGVFNEPVDI
201: VKLNIPDYFT VIKHPMDLGT INKRLTSGAY STPREFLADV RLMFSNALTY NPPGNIVNVM ADEMSKFFEL RWKTIEKKLP TNHAELVEEK SGLHEENGSA
301: SKKRRVSPTQ HVVVPEPPKS KMTDEEKHKL SGELEASLGD LPDNILEFLK ELSSNGTATE EDDIEIDIDI LSDDTLFTLR ALLDKFLLEK QKGNARAEPC
401: EIELPNELGL SNSSMHLGGD NDHVDEEVDI GGNEPPVSSY PSLEIEKDTD PKRDERINTG GPNDSDSSSS SDDESETQRT PDHAEQDHSS PVKTGGKEAG
501: NSLADGNHSI DSLDQLEQSS QQMPFSVDSE AAYQDGESRV SPGKLYRAAL LKNRFADTIL KAREKTLVEV EKGDPEKLRR EREELEMQRR KAKAKLQAEA
601: KAAEEAQRRA EVEAAAEVKR RRELDREAAR QALLQMEKTV EINENSKFLE DLEMLTAVPS EQLHSSVDET SPDHSQDGLG TFKFGGSNPL EQLGLYMKMD
701: DDEEECELAT LQSDDPIDVE EGEID
101: TSAIAVSSSS DIVSCSNAQK GLPLASKKRS AGNPGFGKKS NPSAQKTRGQ SREVSGRFKS VKPASVPSRS NATLMKQCEN LLKKLLSHRN AGVFNEPVDI
201: VKLNIPDYFT VIKHPMDLGT INKRLTSGAY STPREFLADV RLMFSNALTY NPPGNIVNVM ADEMSKFFEL RWKTIEKKLP TNHAELVEEK SGLHEENGSA
301: SKKRRVSPTQ HVVVPEPPKS KMTDEEKHKL SGELEASLGD LPDNILEFLK ELSSNGTATE EDDIEIDIDI LSDDTLFTLR ALLDKFLLEK QKGNARAEPC
401: EIELPNELGL SNSSMHLGGD NDHVDEEVDI GGNEPPVSSY PSLEIEKDTD PKRDERINTG GPNDSDSSSS SDDESETQRT PDHAEQDHSS PVKTGGKEAG
501: NSLADGNHSI DSLDQLEQSS QQMPFSVDSE AAYQDGESRV SPGKLYRAAL LKNRFADTIL KAREKTLVEV EKGDPEKLRR EREELEMQRR KAKAKLQAEA
601: KAAEEAQRRA EVEAAAEVKR RRELDREAAR QALLQMEKTV EINENSKFLE DLEMLTAVPS EQLHSSVDET SPDHSQDGLG TFKFGGSNPL EQLGLYMKMD
701: DDEEECELAT LQSDDPIDVE EGEID
001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
Arabidopsis Description
GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.