Factsheet for HORVU3Hr1G022660.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G083410.1
HORVU2Hr1G083430.3
HORVU2Hr1G083490.1
HORVU3Hr1G092090.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	HORVU2Hr1G083410.1	AT3G48360.1	15316289
AT3G01770.1	HORVU2Hr1G083430.3	AT3G48360.1	15316289
AT3G01770.1	HORVU2Hr1G083490.1	AT3G48360.1	15316289
AT3G01770.1	HORVU3Hr1G092090.3	AT3G48360.1	15316289
AT3G01770.1	HORVU2Hr1G083410.1	AT5G63160.1	15316289
AT3G01770.1	HORVU2Hr1G083430.3	AT5G63160.1	15316289
AT3G01770.1	HORVU2Hr1G083490.1	AT5G63160.1	15316289
AT3G01770.1	HORVU3Hr1G092090.3	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G124100.1	Wheat	nucleus	92.56	92.43
TraesCS3A01G122200.1	Wheat	nucleus	91.99	91.87
TraesCS3B01G141400.2	Wheat	nucleus, plastid	91.99	91.87
HORVU6Hr1G054560.16	Barley	nucleus	83.85	83.5
HORVU3Hr1G015760.1	Barley	nucleus	63.48	81.88
Os02t0601800-03	Rice	nucleus	77.11	76.89
Zm00001d017126_P001	Maize	nucleus	71.49	73.13
EES07108	Sorghum	nucleus	72.75	72.86
VIT_17s0000g01830.t01	Wine grape	nucleus	43.82	41.32
GSMUA_Achr8P01140_001	Banana	nucleus	43.4	41.15
VIT_14s0171g00380.t01	Wine grape	nucleus	41.99	40.57
Bra025262.1-P	Field mustard	nucleus	30.76	40.48
GSMUA_Achr8P08920_001	Banana	nucleus	36.66	40.15
Bra038624.1-P	Field mustard	nucleus	13.48	39.67
KRH07021	Soybean	nucleus	40.87	39.11
KRH63729	Soybean	nucleus	42.84	38.95
KRG94435	Soybean	nucleus	40.03	38.41
CDY20057	Canola	nucleus	34.69	38.29
Bra039088.1-P	Field mustard	nucleus	34.83	38.1
GSMUA_Achr10P...	Banana	nucleus	33.71	37.62
KRH54219	Soybean	nucleus	41.57	37.56
GSMUA_Achr2P20970_001	Banana	nucleus	37.92	37.5
KRH57199	Soybean	nucleus	38.9	37.48
Solyc03g111090.2.1	Tomato	nucleus	40.17	36.62
AT3G01770.1	Thale cress	nucleus	31.88	36.61
AT5G14270.2	Thale cress	nucleus	35.39	36.57
PGSC0003DMT400052108	Potato	nucleus	37.08	36.21
PGSC0003DMT400039290	Potato	nucleus	39.89	36.13
GSMUA_Achr3P02660_001	Banana	plasma membrane	33.01	35.93
CDY13699	Canola	nucleus	22.75	35.45
Solyc02g093880.2.1	Tomato	nucleus	35.96	35.31
KRH07022	Soybean	nucleus	37.36	33.84
GSMUA_Achr3P02670_001	Banana	nucleus	32.87	33.19
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	36.24	33.12
CDX83673	Canola	nucleus	22.89	32.73
AT3G27260.3	Thale cress	nucleus	37.08	32.12
CDX84396	Canola	nucleus	26.54	30.83
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	8.85	27.63
AT5G63320.1	Thale cress	nucleus	36.94	24.79
CDY48139	Canola	nucleus	28.65	23.08
HORVU7Hr1G118300.1	Barley	cytosol	22.05	22.05
HORVU5Hr1G097840.6	Barley	cytosol	10.11	20.57
HORVU7Hr1G018300.6	Barley	cytosol	9.83	19.89
CDY16729	Canola	nucleus	30.06	18.74
HORVU6Hr1G045030.1	Barley	nucleus	16.43	18.48
HORVU6Hr1G045070.4	Barley	nucleus	16.43	18.4
Bra035848.1-P	Field mustard	nucleus	30.06	17.97

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	EnsemblPlantsGene:HORVU3Hr1G022660	EnsemblPlants:HORVU3Hr1G022660.1
InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0YLJ7	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525
PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002964EFE	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:81407859..81416853

Molecular Weight (calculated)

78696.6 Da

IEP (calculated)

5.263

GRAVY (calculated)

-0.713

Length

712 amino acids

Sequence
(BLAST)

001: MPTTSISKPK IRASLAPGYM GPTVRMESGP QIQTKRSYDE IAYRGAGYAE TVGESGSPVR VGSEDFSVPK RKCISLNSDG FDVKREIFVP SKMSSSERRY
101: LRKRFRTELD SVRELLKKPE FLSIMPVSKA PAFSSSAAPR SKKVQRGSHV VRGAKGRFLP TKPRPETSTV LPEATILKQC EAILKKLMTQ KCSHIFNDPV
201: DVEKLNLPDY NDIIKHPMDL GTIKKKLDSG SYASPYDFAA DVRLTFNNAI TYNPRGHVVH DLAIQLNKMF ESRWRTVEKK LATAATKPHV EADRADSKRR
301: KTPPVDRSNL SIDPVRLTEI VKPKMTSKER ETFGDCLTSL TEGPEELPGH IIDLLQQCID NKAEHIGDGE IEIDIHALSD EVLFELKRHV DAYLQERDHQ
401: QTKSQPSENE AVNVSGLSHS STNPCRGSEP VEEDVDICGN ASPILIEKDP QIRTDKCGSP SSSSSDSGSS SSDSDSGSDI ESEPEKVVSP AKLVKGPEQP
501: AELDKSDDVI CPVDANQTAA DVELREQDNE SKAAPEGENA KPERQVSPDK LLRAAVLRGR YADVIVKARG ILSQGGDKQE ELEKLQKEEK ERLLAEGNAA
601: LEARRAEAEA ESKRKLDLER EKARQALQEM ERTVEINDIV HPKDLEMLGT VTTEHIVSSV DATSPEHSQV GMPSFLPGSG SMLEKLGLFM KVDEEEEEEE
701: PCSKGADEGE NH

Best Arabidopsis Sequence Match ( AT3G27260.4 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.