Factsheet for HORVU4Hr1G055510.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G461100.3	Wheat	nucleus, plastid	78.07	32.54
TraesCS7D01G526000.1	Wheat	nucleus, plastid	76.75	32.41
TraesCS7A01G539800.2	Wheat	nucleus, plastid	77.19	32.06
HORVU7Hr1G118300.1	Barley	cytosol	90.35	28.93
Os07t0507700-01	Rice	nucleus	55.7	21.13
EER97261	Sorghum	nucleus	44.3	20.74
Zm00001d004790_P008	Maize	nucleus	48.25	19.03
Zm00001d053022_P001	Maize	nucleus	47.37	17.62
AT5G46550.1	Thale cress	cytosol	24.12	11.13
HORVU3Hr1G015760.1	Barley	nucleus	26.75	11.05
HORVU5Hr1G097840.6	Barley	cytosol	16.67	10.86
HORVU7Hr1G018300.6	Barley	cytosol	16.67	10.8
Bra022044.1-P	Field mustard	nucleus	24.56	10.67
Solyc02g071510.2.1	Tomato	nucleus	26.75	10.39
PGSC0003DMT400018643	Potato	nucleus	27.19	10.23
KRH11112	Soybean	nucleus	24.56	9.91
KRH21136	Soybean	nucleus	24.56	9.89
VIT_10s0003g02240.t01	Wine grape	nucleus	24.56	9.77
HORVU6Hr1G045030.1	Barley	nucleus	26.32	9.48
HORVU6Hr1G045070.4	Barley	nucleus	26.32	9.43
GSMUA_Achr4P27780_001	Banana	nucleus	27.63	9.35
HORVU6Hr1G054560.16	Barley	nucleus	28.07	8.95
HORVU3Hr1G022660.1	Barley	nucleus	27.63	8.85
CDY43984	Canola	endoplasmic reticulum	14.47	7.55
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	22.81	6.68

Protein Annotations

EnsemblPlants:HORVU4Hr1G055510.6	EnsemblPlantsGene:HORVU4Hr1G055510	Gene3D:1.20.920.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:IPR001487	InterPro:IPR036427	PANTHER:PTHR22880	PANTHER:PTHR22880:SF230
PFAM:PF00439	PFscan:PS50014	PRINTS:PR00503	SEG:seg	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI000B46E87F	UniProt:A0A287P4S9	MapMan:15.5.54	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:465556630..465560021

Molecular Weight (calculated)

25563.4 Da

IEP (calculated)

9.777

GRAVY (calculated)

-0.569

Length

228 amino acids

Sequence
(BLAST)

001: MFKYVLLANN LASREADWEG EAVLYVPCVP IREGIMKPEI TAHLSKSGSN KPNTMTTQAC KRRRSVYISS GSKDSGTDSE VEGNKRSQKS GTTSISSSEN
101: RPSSNNKAGS MNASKTRVYR NILGKLMDHP GGWIFHKLVD PDLFGIPDYF DVIRNPMDLG TVKKKLTNKS YLSTDDFAAD VRLTFSNAMT YNPPGIQVHT
201: VAEQLNIMFS LEWTSYERKW IDRNLKPV

Best Arabidopsis Sequence Match ( AT5G46550.1 )
(BLAST)

001: MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI
101: PDYFNVIQKP MDLGTVKSKL LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW NEVREGYKRQ PVERDCSRRS
201: STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK
301: ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA
401: ERMRAQDELK QKRESQRLEI AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF DAMRMDDLEE GEIL

Arabidopsis Description

GTE12Transcription factor GTE12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.