CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G526000.1	Wheat	nucleus, plastid	66.74	60.19
TraesCS7A01G539800.2	Wheat	nucleus, plastid	66.74	59.2
TraesCS7B01G461100.3	Wheat	nucleus, plastid	65.5	58.32
Os07t0507700-01	Rice	nucleus	66.94	54.24
EES09393	Sorghum	nucleus	64.27	51.74
HORVU7Hr1G118300.1	Barley	cytosol	65.5	44.8
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	20.74	44.3
EES09391	Sorghum	cytosol, mitochondrion, nucleus	25.87	28.97
AT5G46550.1	Thale cress	cytosol	27.72	27.33
KRH11112	Soybean	nucleus	31.42	27.08
KRH21136	Soybean	nucleus	31.01	26.68
VIT_10s0003g02240.t01	Wine grape	nucleus	31.21	26.53
Bra022044.1-P	Field mustard	nucleus	28.34	26.29
CDY43984	Canola	endoplasmic reticulum	23.41	26.09
Solyc02g071510.2.1	Tomato	nucleus	31.42	26.06
PGSC0003DMT400018643	Potato	nucleus	31.62	25.41
GSMUA_Achr4P27780_001	Banana	nucleus	32.85	23.74
KXG33001	Sorghum	plastid	10.68	22.91
KXG24325	Sorghum	nucleus	31.62	21.75
EES07108	Sorghum	nucleus	30.39	20.82
EER87804	Sorghum	nucleus	12.12	17.05
OQU82367	Sorghum	nucleus	9.24	14.9
EES02258	Sorghum	plastid	13.35	14.57
KXG24660	Sorghum	plastid	13.14	13.01
OQU84709	Sorghum	nucleus	17.04	11.66

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	UniProt:C5X9B7	ncoils:Coil
EnsemblPlants:EER97261	ProteinID:EER97261	ProteinID:EER97261.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0016740	GO:GO:0043231
GO:GO:0080043	GO:GO:0080044	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR036427	PFAM:PF00439
PRINTS:PR00503	PFscan:PS50014	PANTHER:PTHR22880	PANTHER:PTHR22880:SF230	SMART:SM00297	EnsemblPlantsGene:SORBI_3002G313300
SUPFAM:SSF47370	UniParc:UPI00081AE0D8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:68660935..68674717

Molecular Weight (calculated)

54886.4 Da

IEP (calculated)

7.818

GRAVY (calculated)

-0.658

Length

487 amino acids

Sequence
(BLAST)

001: MVLYQNQKDS YQVCQDHKSE TRKADCIRRE SDCRSTDSEV QRSKQKTEVA SNSIFEHQSL CKNMAEIMNV SKTRLCGKIL KKLMDHKGGW LFHKPVDPVL
101: YGIPDYFYVI CNPMDLGTVK KKLTNKQYVT ASEFAADVRL TFSNAMKYNP PGNDVHAVAE QLNRIFDSEW RSVVRKWSGR NPIQEQPPMK AVKAQAAINL
201: KSAIPRGSAT CSNSLAKEPS INAMSSKVKI RFFVRGSENT PLKAGSQECS LDNSLSCTKE DKISITQSNE NSNLSNGNES LSCNSTSPPI SSEQGEESYL
301: HIEPLSPSKA LRIAMLKRRF AGTIVKAQQN ALLDHGKEID LAKLQLEKER LEKRQQEEKA RIEAQVKAAE AAAQLKLEEE MRRKREQERK AARLALHMMK
401: KTVDIDNSDF LKDLENLCQK WQLNPPSKLI VDFVHGIELT QGLGSPLEAL GLFMKKDIEE EVEHEMEDSV STSQNADVEE GEISCCQ

Best Arabidopsis Sequence Match ( AT5G46550.1 )
(BLAST)

001: MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI
101: PDYFNVIQKP MDLGTVKSKL LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW NEVREGYKRQ PVERDCSRRS
201: STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK
301: ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA
401: ERMRAQDELK QKRESQRLEI AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF DAMRMDDLEE GEIL

Arabidopsis Description

GTE12Transcription factor GTE12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.