CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09393	Sorghum	nucleus	37.47	26.94
EER97261	Sorghum	nucleus	28.97	25.87
KXG33001	Sorghum	plastid	12.41	23.79
EES02258	Sorghum	plastid	15.63	15.25
AT5G46550.1	Thale cress	cytosol	16.32	14.37
EER87804	Sorghum	nucleus	11.26	14.16
Bra022044.1-P	Field mustard	nucleus	15.63	12.95
OQU82367	Sorghum	nucleus	8.97	12.91
VIT_10s0003g02240.t01	Wine grape	nucleus	16.55	12.57
KXG24660	Sorghum	plastid	14.02	12.4
Solyc02g071510.2.1	Tomato	nucleus	16.09	11.93
KRH21136	Soybean	nucleus	15.4	11.84
PGSC0003DMT400018643	Potato	nucleus	16.32	11.72
KRH11112	Soybean	nucleus	14.94	11.5
GSMUA_Achr4P27780_001	Banana	nucleus	16.78	10.83
OQU84709	Sorghum	nucleus	15.86	9.69
EES07108	Sorghum	nucleus	15.63	9.56
CDY43984	Canola	endoplasmic reticulum	9.2	9.15
KXG24325	Sorghum	nucleus	13.33	8.19

Protein Annotations

EnsemblPlants:EES09391	EnsemblPlantsGene:SORBI_3005G059200	Gene3D:1.20.920.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR036427	PANTHER:PTHR22880
PANTHER:PTHR22880:SF153	PFAM:PF00439	PFscan:PS50014	PRINTS:PR00503	ProteinID:EES09391	ProteinID:EES09391.2
SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI00081AD832	UniProt:C5Y626	MapMan:15.5.54	:

Description

hypothetical protein

Coordinates

chr5:-:6112196..6116392

Molecular Weight (calculated)

48972.8 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.464

Length

435 amino acids

Sequence
(BLAST)

001: MTKACKKRRG VCVSSEFGDL SLSTIFEVDE SRLSEMDGVT SIPTCEHQSS YELKAESMNT RKIRWCTKIL RKLMDHKGGW IFNQPVDPVL YGLPDYFDVI
101: RSPMDLGTVK KRLTNKQYVS TDEFAADVRL TFSNAMKYNP PGNDVHAIAQ QLNGIFDSKW ESVKKKFRGP SPVQQQKTIF TKACKKRREV CVSSDLGDSS
201: TVFEAEESRL SKKDGVTPIP TCEHQSSYEL KAESMNASKI RLCGSVVRKL IAYKGGWIFK DPVDPVRLGI PDYFDVIRNP MDLGTVKNKL TKKKYVSIEE
301: FAADVRLTFS NAMKYNPPGN DVHTVAKELN RVFDLLWESM ERKFIGPSPV QEQKTIFTEV QALMDSKSTI GCSNSKPSVI RRPVACSNSI ANKPLTDVLS
401: FKVKIVSFVG SDKQISSKGI QKDEVSSQVE YTKRS

Best Arabidopsis Sequence Match ( AT5G46550.1 )
(BLAST)

001: MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI
101: PDYFNVIQKP MDLGTVKSKL LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW NEVREGYKRQ PVERDCSRRS
201: STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK
301: ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA
401: ERMRAQDELK QKRESQRLEI AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF DAMRMDDLEE GEIL

Arabidopsis Description

GTE12Transcription factor GTE12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.