Factsheet for Zm00001d004790_P008

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09393	Sorghum	nucleus	86.51	82.64
Zm00001d053022_P001	Maize	nucleus	87.37	82.38
TraesCS7D01G526000.1	Wheat	nucleus, plastid	60.21	64.44
TraesCS7A01G539800.2	Wheat	nucleus, plastid	60.73	63.93
TraesCS7B01G461100.3	Wheat	nucleus, plastid	59.86	63.25
Os07t0507700-01	Rice	nucleus	56.4	54.24
HORVU4Hr1G055510.6	Barley	cytosol, nucleus, plastid	19.03	48.25
HORVU7Hr1G118300.1	Barley	cytosol	58.82	47.75
Zm00001d021185_P001	Maize	cytosol, nucleus, plastid	5.54	41.03
KRH11112	Soybean	nucleus	28.55	29.2
KRH21136	Soybean	nucleus	28.03	28.62
VIT_10s0003g02240.t01	Wine grape	nucleus	26.99	27.23
AT5G46550.1	Thale cress	cytosol	23.01	26.92
Solyc02g071510.2.1	Tomato	nucleus	27.34	26.92
PGSC0003DMT400018643	Potato	nucleus	27.85	26.57
Bra022044.1-P	Field mustard	nucleus	23.18	25.52
GSMUA_Achr4P27780_001	Banana	nucleus	28.89	24.78
CDY43984	Canola	endoplasmic reticulum	18.34	24.26
Zm00001d017126_P001	Maize	nucleus	24.91	20.69
Zm00001d035167_P001	Maize	nucleus	26.82	20.45
Zm00001d049638_P009	Maize	nucleus	26.3	19.56
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	10.21	16.16
Zm00001d008922_P001	Maize	plastid	13.49	15.92
Zm00001d002267_P001	Maize	plastid	12.11	15.52
Zm00001d049400_P001	Maize	plastid	12.11	14.46
Zm00001d024251_P001	Maize	cytosol	12.11	14.37
Zm00001d026333_P001	Maize	cytosol	11.59	14.23
Zm00001d016131_P006	Maize	nucleus	14.01	12.07
Zm00001d053427_P007	Maize	nucleus	12.98	10.98
Zm00001d039369_P004	Maize	plastid	13.15	8.11
Zm00001d046528_P001	Maize	cytosol	1.9	7.33

Protein Annotations

Gene3D:1.20.920.10	EntrezGene:103647016	MapMan:15.5.54	UniProt:A0A1D6EHJ1	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487
InterPro:IPR036427	ProteinID:ONM19590.1	PFAM:PF00439	PRINTS:PR00503	PFscan:PS50014	PANTHER:PTHR22880
PANTHER:PTHR22880:SF230	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0008445DE7	EnsemblPlantsGene:Zm00001d004790	EnsemblPlants:Zm00001d004790_P008
EnsemblPlants:Zm00001d004790_T008	SEG:seg	:	:	:	:

Description

Transcription factor GTE12

Coordinates

chr2:+:139441027..139457361

Molecular Weight (calculated)

64086.9 Da

IEP (calculated)

6.458

GRAVY (calculated)

-0.636

Length

578 amino acids

Sequence
(BLAST)

001: MAQACKKRRG VYISSESGDS DTDSDVEGSK HSQKSGVTSI STCEHQSSYN LKAASMKSSR MIRLCGNIVR KLIDHKCGWL FKEPVDPDLY GIPDYFDVIR
101: SPMDLGTIKN KLTKKKYVSI EEFAADVRLT FSNAMKYNPP GNDVHIFAKE LNEMFDSEWE SVERKFRGRN LGQDQQTMKA IKVRAMMDSK STVARGPVAC
201: SNPKTLVARG PVACSNSIAK KTLTDALSSK VKIKFSVRSS AHTSSKDILV QAAGSKEGSL NHSVPTGNKE ASSNCTIPIA KEAKISRARE IERCSGSIGK
301: QSWSCNDTST SPLASSVQGE ESYLHDEPLS PSRALRAAML RSRFAGTIVK AQQKALLDHG KNIDPVKLQL EKERLEKRQQ EEKARIEAQV KAAEAAAQQK
401: FEEEMRMKRK QEREAARLAL RMVMKKTVDI DNSDFLKELE NFSKTWQANP PGKLIVDFIS GDLPPGLGSP LERLGLFMKE DFEDEVEQEM EDRVSPSMDV
501: DIRKDFQEDL GHEMQDSASP VTVIGTKNDV QGVAGHEMED SGSPATVIDT KKEETEHEMV DSVSPLMDVD TEEGEISC

Best Arabidopsis Sequence Match ( AT5G46550.1 )
(BLAST)

001: MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI
101: PDYFNVIQKP MDLGTVKSKL LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW NEVREGYKRQ PVERDCSRRS
201: STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK
301: ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA
401: ERMRAQDELK QKRESQRLEI AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF DAMRMDDLEE GEIL

Arabidopsis Description

GTE12Transcription factor GTE12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.