Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g09790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01770.1 | VIT_17s0000g09790.t01 | AT3G48360.1 | 15316289 |
| AT3G01770.1 | VIT_17s0000g09790.t01 | AT5G63160.1 | 15316289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07021 | Soybean | nucleus | 66.35 | 65.73 |
| KRG94435 | Soybean | nucleus | 64.99 | 64.56 |
| VIT_17s0000g01830.t01 | Wine grape | nucleus | 61.33 | 59.87 |
| PGSC0003DMT400052108 | Potato | nucleus | 58.89 | 59.53 |
| Solyc02g093880.2.1 | Tomato | nucleus | 57.8 | 58.76 |
| Bra025262.1-P | Field mustard | nucleus | 42.88 | 58.41 |
| KRH07022 | Soybean | nucleus | 61.47 | 57.63 |
| Bra039088.1-P | Field mustard | nucleus | 49.8 | 56.37 |
| CDY20057 | Canola | nucleus | 49.25 | 56.28 |
| CDY13699 | Canola | nucleus | 34.06 | 54.92 |
| AT3G01770.1 | Thale cress | nucleus | 45.05 | 53.55 |
| GSMUA_Achr8P01140_001 | Banana | nucleus | 53.87 | 52.86 |
| AT5G14270.2 | Thale cress | nucleus | 49.25 | 52.69 |
| CDX83673 | Canola | nucleus | 34.19 | 50.6 |
| GSMUA_Achr8P08920_001 | Banana | nucleus | 43.42 | 49.23 |
| AT3G27260.3 | Thale cress | nucleus | 54.27 | 48.66 |
| GSMUA_Achr10P... | Banana | nucleus | 41.52 | 47.96 |
| GSMUA_Achr2P20970_001 | Banana | nucleus | 45.86 | 46.94 |
| Os02t0601800-03 | Rice | nucleus | 43.83 | 45.24 |
| TraesCS6D01G196600.3 | Wheat | nucleus | 42.33 | 44.38 |
| TraesCS3A01G087800.1 | Wheat | plastid | 36.63 | 44.26 |
| EES07108 | Sorghum | nucleus | 42.2 | 43.74 |
| GSMUA_Achr3P02660_001 | Banana | plasma membrane | 38.81 | 43.73 |
| TraesCS6A01G214000.1 | Wheat | nucleus | 41.79 | 43.63 |
| Zm00001d017126_P001 | Maize | nucleus | 41.11 | 43.53 |
| TraesCS3B01G103200.2 | Wheat | nucleus | 41.79 | 43.08 |
| TraesCS3B01G141400.2 | Wheat | nucleus, plastid | 41.66 | 43.06 |
| TraesCS3D01G087900.4 | Wheat | nucleus | 41.79 | 43.02 |
| HORVU6Hr1G054560.16 | Barley | nucleus | 41.66 | 42.94 |
| TraesCS6B01G244000.2 | Wheat | plastid | 41.93 | 42.92 |
| TraesCS3D01G124100.1 | Wheat | nucleus | 40.98 | 42.36 |
| TraesCS3A01G122200.1 | Wheat | nucleus | 40.84 | 42.22 |
| TraesCS7D01G309100.1 | Wheat | nucleus | 42.88 | 42.13 |
| HORVU3Hr1G022660.1 | Barley | nucleus | 40.57 | 41.99 |
| TraesCS7A01G312700.2 | Wheat | nucleus | 42.47 | 41.73 |
| TraesCS7B01G212400.2 | Wheat | nucleus | 42.2 | 41.47 |
| KXG24325 | Sorghum | nucleus | 39.21 | 40.82 |
| Zm00001d035167_P001 | Maize | nucleus | 41.66 | 40.5 |
| HORVU7Hr1G074620.7 | Barley | cytosol, mitochondrion, nucleus | 42.47 | 40.18 |
| GSMUA_Achr3P02670_001 | Banana | nucleus | 36.77 | 38.44 |
| HORVU3Hr1G015760.1 | Barley | nucleus | 28.77 | 38.41 |
| Zm00001d049638_P009 | Maize | nucleus | 39.62 | 37.58 |
| VIT_10s0003g02240.t01 | Wine grape | nucleus | 23.88 | 30.72 |
| VIT_03s0097g00570.t01 | Wine grape | nucleus | 20.9 | 27.9 |
| VIT_19s0014g01650.t01 | Wine grape | nucleus | 18.18 | 22.45 |
| VIT_13s0019g03950.t01 | Wine grape | nucleus | 11.4 | 21.76 |
| VIT_12s0028g02510.t01 | Wine grape | nucleus | 18.05 | 20.34 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | EntrezGene:100261067 | wikigene:100261067 | MapMan:15.5.54 | InterPro:Bromodomain |
| InterPro:Bromodomain-like_sf | ProteinID:CCB62233 | ProteinID:CCB62233.1 | ncoils:Coil | UniProt:F6I5L5 | EMBL:FN596749 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GTE_bromo | InterPro:IPR001487 | InterPro:IPR027353 |
| InterPro:IPR036427 | InterPro:IPR038336 | EntrezGene:LOC100261067 | wikigene:LOC100261067 | InterPro:NET_dom | InterPro:NET_sf |
| PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 | PFscan:PS50014 | PFscan:PS51525 | PANTHER:PTHR22880 |
| PANTHER:PTHR22880:SF227 | SMART:SM00297 | SUPFAM:SSF47370 | TIGR:TC63261 | UniParc:UPI0001984CBF | ArrayExpress:VIT_14s0171g00380 |
| EnsemblPlantsGene:VIT_14s0171g00380 | EnsemblPlants:VIT_14s0171g00380.t01 | unigene:Vvi.12793 | RefSeq:XP_002270843 | RefSeq:XP_002270843.2 | RefSeq:XP_010660801.1 |
| RefSeq:XP_010660802.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:26199224..26207064
Molecular Weight (calculated)
81773.4 Da
IEP (calculated)
4.867
GRAVY (calculated)
-0.808
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNDRFPGG YYRAFENQGE SEGSGSSGRV DMEIAASEDS CVPMRKCINL NSNNCDSFSV PIQVLPLSNI SPSERKDLVL RLRMELEQIR LLQKKVDLQR
101: TNGVALSSSS DILSCSNGQR GHVDNGRKSS ALTSGPGKKL EPLGNKNRAW NRGTSGRFES ATQASAPSTA SVLLMKQCET LLKQLMSHQH GWVFNEPVDI
201: VKLNIPDYFT IIKHPMDLGT IKGKIASGAY SSPLDFAADV RLTFSNAQTF NPPGNDVHKM ADTLSKFFEV RWKTIEKKLP VTKTQSLPGK YGTHGEMKTA
301: KPMPPSKKRK VTSTHHEVIQ EPVQKVMTAD EKRNLGRDLE DLLGEIPVQI IDFLRVHSSN GRETGEDDEI EVDIEALSDD TLFTLRKLLD DYLQEKQKSH
401: GKAEPCEIEL LHDSGPSNSS IQPCKGNDPV EEDIDIVGNE APVSSYPPVE IEKDTEHRSS KCVLSRSFSE PDNSSSESEL DGAKTSKPVN ISEGQESLDS
501: GALLDEKTSA GNPCEENQSV SGVDQLEQTS QQKPNYVESD SQQDGESLTD RQVSPEKLYR AAVLKNRFAD TIFKAREKTL NQGEKGDPEK LRREREELEM
601: QRRKEKARLQ AEAKAAEDAR RRAEAEAAAE AKKKRELERA AARQALQKME KTVEINENSR FLEDLELLRA APAEHLPSSV DETSPDHSQD GLSGFRFVGS
701: NPLEQLGLYM KVDDEEEDGE PHSPPDVVND VEEGEID
101: TNGVALSSSS DILSCSNGQR GHVDNGRKSS ALTSGPGKKL EPLGNKNRAW NRGTSGRFES ATQASAPSTA SVLLMKQCET LLKQLMSHQH GWVFNEPVDI
201: VKLNIPDYFT IIKHPMDLGT IKGKIASGAY SSPLDFAADV RLTFSNAQTF NPPGNDVHKM ADTLSKFFEV RWKTIEKKLP VTKTQSLPGK YGTHGEMKTA
301: KPMPPSKKRK VTSTHHEVIQ EPVQKVMTAD EKRNLGRDLE DLLGEIPVQI IDFLRVHSSN GRETGEDDEI EVDIEALSDD TLFTLRKLLD DYLQEKQKSH
401: GKAEPCEIEL LHDSGPSNSS IQPCKGNDPV EEDIDIVGNE APVSSYPPVE IEKDTEHRSS KCVLSRSFSE PDNSSSESEL DGAKTSKPVN ISEGQESLDS
501: GALLDEKTSA GNPCEENQSV SGVDQLEQTS QQKPNYVESD SQQDGESLTD RQVSPEKLYR AAVLKNRFAD TIFKAREKTL NQGEKGDPEK LRREREELEM
601: QRRKEKARLQ AEAKAAEDAR RRAEAEAAAE AKKKRELERA AARQALQKME KTVEINENSR FLEDLELLRA APAEHLPSSV DETSPDHSQD GLSGFRFVGS
701: NPLEQLGLYM KVDDEEEDGE PHSPPDVVND VEEGEID
001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
Arabidopsis Description
GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.