Factsheet for VIT_19s0014g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus, plastid	43.55	58.17
GSMUA_Achr11P...	Banana	nucleus	38.19	53.9
VIT_12s0028g02510.t01	Wine grape	nucleus	58.46	53.36
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	45.06	52.33
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	25.46	48.87
CDX83890	Canola	nucleus, plastid	29.65	48.36
CDX96751	Canola	nucleus, plastid	29.65	48.36
CDY66497	Canola	nucleus	12.4	47.74
Zm00001d008922_P001	Maize	plastid	38.86	47.35
Os01t0214300-01	Rice	cytosol, nucleus	13.07	46.99
CDY19175	Canola	nucleus, plastid	30.15	46.88
TraesCS3D01G146600.1	Wheat	nucleus, plastid	39.2	46.25
TraesCS3A01G140500.1	Wheat	nucleus, plastid	39.2	45.88
TraesCS3B01G164100.1	Wheat	nucleus, plastid	39.03	45.69
EES02258	Sorghum	plastid	33.5	44.84
CDY48040	Canola	nucleus, plastid	29.31	44.64
Bra008074.1-P	Field mustard	nucleus, plastid	29.31	44.64
AT1G73150.1	Thale cress	plastid	34.17	44.25
Bra025948.1-P	Field mustard	mitochondrion	30.49	43.96
GSMUA_Achr1P11660_001	Banana	nucleus	37.69	43.86
CDY26215	Canola	mitochondrion	30.32	43.72
PGSC0003DMT400039787	Potato	nucleus	51.42	43.61
Solyc12g014170.1.1	Tomato	nucleus	50.59	43.08
Bra016586.1-P	Field mustard	nucleus, plastid	31.49	42.73
CDX82101	Canola	nucleus	13.07	42.62
CDY26219	Canola	nucleus	13.07	41.94
CDX82103	Canola	plastid	21.94	41.85
Os02t0250300-01	Rice	nucleus	45.39	41.31
PGSC0003DMT400032373	Potato	nucleus	50.75	40.89
AT1G17790.1	Thale cress	nucleus, plastid	33.33	40.86
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.79	40.0
HORVU6Hr1G045030.1	Barley	nucleus	42.38	39.97
HORVU6Hr1G045070.4	Barley	nucleus	42.38	39.78
TraesCS6D01G177700.1	Wheat	cytosol, plastid	41.88	39.37
Solyc07g062660.2.1	Tomato	nucleus	49.41	39.23
Zm00001d016131_P006	Maize	nucleus	43.38	38.6
OQU84709	Sorghum	nucleus	44.72	37.5
CDY21732	Canola	cytosol	15.24	35.83
VIT_03s0097g00570.t01	Wine grape	nucleus	31.99	34.6
Zm00001d053427_P007	Maize	nucleus	39.2	34.26
CDX81848	Canola	cytosol, nucleus, plastid	13.23	28.73
VIT_13s0019g03950.t01	Wine grape	nucleus	15.91	24.61
Zm00001d039369_P004	Maize	plastid	35.68	22.73
VIT_17s0000g01830.t01	Wine grape	nucleus	27.47	21.72
VIT_14s0171g00380.t01	Wine grape	nucleus	22.45	18.18
VIT_10s0003g02240.t01	Wine grape	nucleus	15.24	15.88

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100255658	wikigene:100255658	MapMan:15.5.54	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	ProteinID:CCB46276	ProteinID:CCB46276.1	UniProt:F6H1Y0	EMBL:FN595229	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427
InterPro:IPR038336	EntrezGene:LOC100255658	wikigene:LOC100255658	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439
PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147
SMART:SM00297	SUPFAM:SSF47370	TIGR:TC52589	UniParc:UPI000198582A	ArrayExpress:VIT_19s0014g01650	EnsemblPlantsGene:VIT_19s0014g01650
EnsemblPlants:VIT_19s0014g01650.t01	unigene:Vvi.5248	RefSeq:XP_002283002	RefSeq:XP_002283002.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:1734790..1741600

Molecular Weight (calculated)

65762.5 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.944

Length

597 amino acids

Sequence
(BLAST)

001: MASEPLGGGG GDSREKQKWA ESGKVYKRKN HNKGIKINNE SSIINNNVAQ QSSQTLATTT EDANSLQPQA LSRFDAASDD SSSHTPPAEN GRENMNGNGV
101: KPEDPNVEKI RFRSISMRSK VEKRDLRRKL LGELDQVRSL AKKLDTNDGQ LSGYAHSQVS GNDGLDRGGG ALRVNSEVGS VGVQDSRPFR GLSVSVMGNS
201: HGIGEFVEKE KRTPKANKYY QNPDFVLGKD KLPPPESNKK PKSNGVGIDK YVAQAFKNCS NLLAKLMKHK HGWVFNNPVD VKGLGLHDYY SIIKHPMDFG
301: TVKSRLSKNW YKSPREFAED VRLTLQNAMT YNPKGQDVHC MAEELLKIFE EKWAAIEADL YWRFGMGHDA GTPTPTSRKA PYLHHHHSPE MRTVDRSGSM
401: AMPIDSNLKP GNFAHMRMPV PKKPKAKDPH KRDMTYEEKQ KLSSNLQSLP SEKLDHIVQI IKKRNSAVSQ QDDEIEVDID SVDAETLWEL DRYVTNYKKS
501: LSKNKRKAEL AFQARANSDH NIQEMYSSSA TAGAPKETKS DGEHVSASPI QAEKQGDNAG GGSSSSSSSS DSGSSSSDSD SESSSAYGSD AGHSPKN

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.