Factsheet for VIT_12s0028g02510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15568	Canola	nucleus	30.43	62.78
PGSC0003DMT400027387	Potato	nucleus	51.53	58.51
VIT_19s0014g01650.t01	Wine grape	nucleus	53.36	58.46
KRH22304	Soybean	nucleus	57.19	58.44
GSMUA_Achr11P...	Banana	nucleus	37.77	58.39
KRH27020	Soybean	nucleus	57.49	58.2
GSMUA_Achr10P...	Banana	nucleus, plastid	39.6	57.94
Solyc10g008070.2.1	Tomato	nucleus	31.8	57.46
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	41.28	52.53
Os01t0214300-01	Rice	cytosol, nucleus	12.54	49.4
Zm00001d008922_P001	Maize	plastid	37.0	49.39
CDY06203	Canola	nucleus	48.17	48.91
Bra032431.1-P	Field mustard	nucleus	48.01	47.79
TraesCS3D01G146600.1	Wheat	nucleus, plastid	36.85	47.63
CDY09981	Canola	nucleus	46.48	47.57
TraesCS3A01G140500.1	Wheat	nucleus, plastid	36.85	47.25
TraesCS3B01G164100.1	Wheat	nucleus, plastid	36.7	47.06
EES02258	Sorghum	plastid	31.19	45.74
CDX86532	Canola	nucleus	47.71	44.26
GSMUA_Achr1P11660_001	Banana	nucleus	34.1	43.47
KRH25703	Soybean	nucleus	57.65	43.13
Bra015485.1-P	Field mustard	nucleus	49.39	43.12
Os02t0250300-01	Rice	nucleus	42.81	42.68
Bra030643.1-P	Field mustard	nucleus	47.86	42.35
HORVU6Hr1G045030.1	Barley	nucleus	40.21	41.55
HORVU6Hr1G045070.4	Barley	nucleus	40.21	41.35
AT1G06230.2	Thale cress	nucleus	48.17	41.12
TraesCS6D01G177700.1	Wheat	cytosol, plastid	39.91	41.1
Zm00001d016131_P006	Maize	nucleus	42.05	40.98
OQU84709	Sorghum	nucleus	43.27	39.75
KRH55813	Soybean	nucleus	57.65	38.27
CDY68605	Canola	cytosol	31.96	38.07
CDY72432	Canola	cytosol	29.05	37.62
Zm00001d053427_P007	Maize	nucleus	37.77	36.16
VIT_03s0097g00570.t01	Wine grape	nucleus	29.05	34.42
VIT_13s0019g03950.t01	Wine grape	nucleus	14.68	24.87
Zm00001d039369_P004	Maize	plastid	34.4	24.01
VIT_17s0000g01830.t01	Wine grape	nucleus	25.54	22.12
VIT_14s0171g00380.t01	Wine grape	nucleus	20.34	18.05
VIT_10s0003g02240.t01	Wine grape	nucleus	14.53	16.58

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	EntrezGene:100264393	wikigene:100264393	MapMan:15.5.54	EMBL:AM445275
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ProteinID:CAN67478	ProteinID:CAN67478.1	ProteinID:CCB47348	ProteinID:CCB47348.1
ncoils:Coil	UniProt:F6H4Y0	EMBL:FN595235	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	EntrezGene:LOC100264393
wikigene:LOC100264393	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503
PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI0001984419	ArrayExpress:VIT_12s0028g02510	EnsemblPlantsGene:VIT_12s0028g02510	EnsemblPlants:VIT_12s0028g02510.t01	unigene:Vvi.20149	RefSeq:XP_002276195
RefSeq:XP_002276195.1	RefSeq:XP_010657026.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:3218013..3224727

Molecular Weight (calculated)

71759.9 Da

IEP (calculated)

9.591

GRAVY (calculated)

-0.837

Length

654 amino acids

Sequence
(BLAST)

001: MASGPIVDGG GGGGGDGSRE KKRWQESKVY TRKAFKGPKA TAPPTPTDTA TTAALATATA TATAATTAPN NSDNNSTPQQ PVQAVASEHA NSSQQPREIN
101: AETAVSDDSS SLSRAHLAEP SSIEAPPAGN GAVKPGISRL ENRIKINLAT RSKQETRELR RKLQTELDLV RSLVKKIEAK DVLGSEGGVV DDSVAKRVSS
201: EVASVNESRP LQQSRPLQQS RSFPQAKSLS QSRPLHQLSI SVIENSQGGS DVVEKEKRTP KANQFYRNSE FLLGKEKFPT ESNKKTKLNG KKHGGVEPGY
301: GSAMNKCFKN CGALLERLMK HKHGWVFNSP VDVKGLGLHD YFSIITDPMD LGTVKSRLNK NWYKSPREFA EDVRLTFHNA MTYNPKGQDV HVMAEVLSKI
401: FEDKWAVIEA EYSRELRLGY EYEMGLPTPT SRKLPAPPPM LPSHEMRRVL DRSESMTYAV DPKIKPMNYT PLVRTPSLKK PKAKDPNKRD MTFEEKQKLS
501: TNLQNLPSEK LDNIVHIIKR NNSALCQDND EIEVDIDSVD AETLWELDRY VTNYKKSLSK NKRKAELAQA RAEAARKIQE RNPVPVVTEA ARETNIDERN
601: ISSSSPVQGE KQGENVSGSS SSSSSDSDSG SSSSDSDSET SSADGSDARP SPRT

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.