Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032431.1-P | Field mustard | nucleus | 97.52 | 95.59 |
| CDY15568 | Canola | nucleus | 44.41 | 90.22 |
| CDY09981 | Canola | nucleus | 89.44 | 90.14 |
| CDX86532 | Canola | nucleus | 81.21 | 74.18 |
| AT1G06230.2 | Thale cress | nucleus | 82.76 | 69.58 |
| CDY68605 | Canola | cytosol | 57.3 | 67.21 |
| CDY72432 | Canola | cytosol | 51.71 | 65.94 |
| KRH22304 | Soybean | nucleus | 51.55 | 51.88 |
| KRH27020 | Soybean | nucleus | 52.02 | 51.86 |
| Solyc10g008070.2.1 | Tomato | nucleus | 27.95 | 49.72 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 33.7 | 48.55 |
| PGSC0003DMT400027387 | Potato | nucleus | 43.17 | 48.26 |
| VIT_12s0028g02510.t01 | Wine grape | nucleus | 48.91 | 48.17 |
| CDY66497 | Canola | nucleus | 11.34 | 47.1 |
| GSMUA_Achr11P... | Banana | nucleus | 29.5 | 44.92 |
| GSMUA_Achr7P09350_001 | Banana | nucleus, plastid | 35.4 | 44.36 |
| Zm00001d008922_P001 | Maize | plastid | 33.23 | 43.67 |
| CDX96751 | Canola | nucleus, plastid | 24.69 | 43.44 |
| CDY19175 | Canola | nucleus, plastid | 25.62 | 42.97 |
| CDX83890 | Canola | nucleus, plastid | 24.38 | 42.9 |
| CDY26215 | Canola | mitochondrion | 27.02 | 42.03 |
| TraesCS3D01G146600.1 | Wheat | nucleus, plastid | 32.92 | 41.9 |
| TraesCS3B01G164100.1 | Wheat | nucleus, plastid | 33.07 | 41.76 |
| TraesCS3A01G140500.1 | Wheat | nucleus, plastid | 32.92 | 41.57 |
| CDY26219 | Canola | nucleus | 11.96 | 41.4 |
| CDY48040 | Canola | nucleus, plastid | 25.16 | 41.33 |
| EES02258 | Sorghum | plastid | 28.57 | 41.26 |
| Os01t0214300-01 | Rice | cytosol, nucleus | 10.56 | 40.96 |
| CDX82101 | Canola | nucleus | 11.49 | 40.44 |
| GSMUA_Achr1P11660_001 | Banana | nucleus | 31.99 | 40.16 |
| Os02t0250300-01 | Rice | nucleus | 40.84 | 40.09 |
| KRH25703 | Soybean | nucleus | 54.04 | 39.82 |
| Zm00001d016131_P006 | Maize | nucleus | 39.91 | 38.3 |
| HORVU6Hr1G045030.1 | Barley | nucleus | 37.58 | 38.23 |
| HORVU6Hr1G045070.4 | Barley | nucleus | 37.73 | 38.21 |
| CDY08771 | Canola | nucleus | 20.81 | 37.85 |
| TraesCS6D01G177700.1 | Wheat | cytosol, plastid | 37.11 | 37.64 |
| OQU84709 | Sorghum | nucleus | 41.46 | 37.5 |
| CDX82103 | Canola | plastid | 18.01 | 37.06 |
| KRH55813 | Soybean | nucleus | 53.57 | 35.03 |
| CDY65656 | Canola | cytosol | 10.71 | 33.33 |
| Zm00001d053427_P007 | Maize | nucleus | 34.78 | 32.8 |
| CDX70356 | Canola | nucleus, plastid | 12.58 | 32.79 |
| CDY21732 | Canola | cytosol | 12.73 | 32.28 |
| CDX78390 | Canola | nucleus | 11.8 | 31.8 |
| CDY65645 | Canola | nucleus, plastid | 24.84 | 31.43 |
| CDX81848 | Canola | cytosol, nucleus, plastid | 11.18 | 26.18 |
| Zm00001d039369_P004 | Maize | plastid | 31.06 | 21.34 |
| CDX90608 | Canola | cytosol | 11.65 | 21.07 |
| CDY29075 | Canola | cytoskeleton, cytosol, nucleus | 11.49 | 20.33 |
| CDX70357 | Canola | plastid | 12.11 | 19.85 |
| CDY31648 | Canola | nucleus | 12.58 | 19.06 |
| CDX84278 | Canola | nucleus | 12.58 | 18.49 |
| CDY20057 | Canola | nucleus | 18.17 | 18.14 |
| CDX84396 | Canola | nucleus | 13.04 | 13.7 |
| CDY43984 | Canola | endoplasmic reticulum | 8.85 | 13.04 |
| CDY48139 | Canola | nucleus | 14.44 | 10.52 |
| CDY13699 | Canola | nucleus | 7.3 | 10.28 |
| CDY16729 | Canola | nucleus | 18.01 | 10.16 |
| CDX83673 | Canola | nucleus | 7.45 | 9.64 |
Protein Annotations
| Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | EnsemblPlants:CDY06203 |
| ProteinID:CDY06203 | ProteinID:CDY06203.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00122109001 | InterPro:GTE_bromo | InterPro:IPR001487 | InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 |
| InterPro:NET_dom | InterPro:NET_sf | PFAM:PF00439 | PFAM:PF17035 | PRINTS:PR00503 | PFscan:PS50014 |
| PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF147 | SMART:SM00297 | SUPFAM:SSF47370 | UniParc:UPI0004EE1A68 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g50000D
Coordinates
chrLK031968:+:267908..271122
Molecular Weight (calculated)
71524.8 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.859
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEPVNGDG AREKKQSIRV YTRKGKGQRK HSPYFAFDGG DKPENNHATP PETLARESLD PLHEARATAP EARAILDDVN TVVVDENSIK EPPKSLPLED
101: ATNMVVDKKA IEVSSEDEEY EDHLIKETHP ENAAAESVPM EEDVDGRIRI HVASKSKQQK EEIRKRLEDQ LNVVRGLVKK IEDKEGEIGA YHDSPLTNGG
201: GRILSGFASA GLPREVIRVP RPLNQLSISV LENTQGVNEY VEKEKRTPKA NQFYRTSEFL LGDKLPPAES NKKSKSSSKK YGGEAGHGFG AGSKVFKNCS
301: ALLERLMKHK HGWVFNAPVD VKGLGLHDYF TIIEHPMDLG TVKSTLTNNM YNSPREFAED VRLTFHNAMT YNPPGQDVHI MAQVLLQMFE ERWAVIESDY
401: NREMRFVTAY EMNLPASTMR SRLGPTMPPP PINVRNSTMD WSSRPADLQH PKPTTTPGRT PTSARTPALK KPKANEPNKR DMTYEEKQKL SGHLQNLPPD
501: KLDAIVQIVN RRNTAVNLKD EEIEVDIDSV DPETLWELDR FVINYKKGLS KKKRKAELAM QARAEAERNG QQQMAPAPVA REFSREGGNT AKKTLPTSLP
601: SQVEKQNNEA SRSSSSSSSS SGSSSSSSDS DSDSSSSSSG SDQT
101: ATNMVVDKKA IEVSSEDEEY EDHLIKETHP ENAAAESVPM EEDVDGRIRI HVASKSKQQK EEIRKRLEDQ LNVVRGLVKK IEDKEGEIGA YHDSPLTNGG
201: GRILSGFASA GLPREVIRVP RPLNQLSISV LENTQGVNEY VEKEKRTPKA NQFYRTSEFL LGDKLPPAES NKKSKSSSKK YGGEAGHGFG AGSKVFKNCS
301: ALLERLMKHK HGWVFNAPVD VKGLGLHDYF TIIEHPMDLG TVKSTLTNNM YNSPREFAED VRLTFHNAMT YNPPGQDVHI MAQVLLQMFE ERWAVIESDY
401: NREMRFVTAY EMNLPASTMR SRLGPTMPPP PINVRNSTMD WSSRPADLQH PKPTTTPGRT PTSARTPALK KPKANEPNKR DMTYEEKQKL SGHLQNLPPD
501: KLDAIVQIVN RRNTAVNLKD EEIEVDIDSV DPETLWELDR FVINYKKGLS KKKRKAELAM QARAEAERNG QQQMAPAPVA REFSREGGNT AKKTLPTSLP
601: SQVEKQNNEA SRSSSSSSSS SGSSSSSSDS DSDSSSSSSG SDQT
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
Arabidopsis Description
GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.