CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005383.1-P	Field mustard	nucleus	90.59	100.0
CDX84278	Canola	nucleus	97.65	94.75
AT2G34900.1	Thale cress	nucleus	76.0	83.68
Solyc09g090370.2.1	Tomato	nucleus	41.65	51.16
KRH45305	Soybean	nucleus	43.53	50.41
Os06t0138000-01	Rice	cytosol, nucleus	14.35	49.19
PGSC0003DMT400044321	Potato	nucleus	43.29	48.81
KRH37141	Soybean	cytosol, nucleus	29.65	46.15
TraesCS1B01G385900.1	Wheat	cytosol	36.0	44.74
TraesCS1A01G367300.1	Wheat	cytosol	36.71	44.7
TraesCS7A01G080900.1	Wheat	nucleus	36.24	43.87
TraesCS1D01G373000.1	Wheat	cytosol	36.94	43.73
EER87804	Sorghum	nucleus	35.53	43.64
TraesCS4A01G377900.2	Wheat	cytosol	36.0	43.59
TraesCS7D01G074500.1	Wheat	cytosol	35.76	43.3
HORVU5Hr1G097840.6	Barley	cytosol	35.53	43.14
KRH12139	Soybean	nucleus	35.06	42.69
HORVU7Hr1G018300.6	Barley	cytosol	35.29	42.61
GSMUA_Achr8P29340_001	Banana	nucleus	38.59	41.94
Zm00001d036092_P004	Maize	endoplasmic reticulum, nucleus, plastid	35.06	40.82
CDX90608	Canola	cytosol	33.18	39.61
CDY29075	Canola	cytoskeleton, cytosol, nucleus	33.88	39.56
GSMUA_Achr8P34430_001	Banana	nucleus	35.76	35.35
CDX82101	Canola	nucleus	10.82	25.14
CDX82103	Canola	plastid	17.18	23.32
CDY15568	Canola	nucleus	16.71	22.4
CDX96751	Canola	nucleus, plastid	18.12	21.04
CDY19175	Canola	nucleus, plastid	18.59	20.57
CDX83890	Canola	nucleus, plastid	17.65	20.49
CDY21732	Canola	cytosol	12.0	20.08
CDY48040	Canola	nucleus, plastid	18.35	19.9
CDY65656	Canola	cytosol	9.65	19.81
CDY08771	Canola	nucleus	16.24	19.49
CDY26215	Canola	mitochondrion	18.35	18.84
CDY66497	Canola	nucleus	6.12	16.77
CDY26219	Canola	nucleus	6.82	15.59
CDY65645	Canola	nucleus, plastid	16.94	14.15
CDX70357	Canola	plastid	12.71	13.74
CDX81848	Canola	cytosol, nucleus, plastid	8.24	12.73
CDY06203	Canola	nucleus	19.06	12.58
CDY09981	Canola	nucleus	18.82	12.52
CDX86532	Canola	nucleus	19.06	11.49
CDY20057	Canola	nucleus	17.18	11.32
CDY72432	Canola	cytosol	12.71	10.69
CDX78390	Canola	nucleus	5.88	10.46
CDY68605	Canola	cytosol	13.18	10.2
CDX70356	Canola	nucleus, plastid	5.88	10.12
CDY43984	Canola	endoplasmic reticulum	10.12	9.84
CDX84396	Canola	nucleus	11.53	7.99
CDY13699	Canola	nucleus	7.29	6.78
CDY48139	Canola	nucleus	13.65	6.56
CDX83673	Canola	nucleus	7.29	6.22
CDY16729	Canola	nucleus	16.0	5.95

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A078H4A7	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
InterPro:Bromodomain_CS	EnsemblPlants:CDY31648	ProteinID:CDY31648	ProteinID:CDY31648.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00050255001	InterPro:GTE1/GTE6	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	ScanProsite:PS00633
PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	SMART:SM00297	SUPFAM:SSF47370
UniParc:UPI0004EEA7BD	SEG:seg	:	:	:	:

Description

BnaA05g08990DBnaA05g08990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4A7]

Coordinates

chrLK032277:-:137908..140231

Molecular Weight (calculated)

47749.8 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.658

Length

425 amino acids

Sequence
(BLAST)

001: MGRTHKPRFE KPFSDLLFFV LPSCVSWSVE KLASQYHASP MSVNVKEEPV LVPNCDVVEN SELEVLNGDE ESKLEDYGTC VDVITERVNQ LEQKVVEVEH
101: FYSTKDGAGQ TNTSKSNSGG KKVAISQPSK CSSAGKEKTR GKHVSSPELM RQFATIIRQI AQQKWAWPFL EPVDVEGLGL DDYHKVIEKP MDLGTIRTKM
201: EGSEYSNVRE IYADVRLVFK NAMRYNEEKH DVYVMAESLL EKFEEKWLTI MPKLVEEEKK QAEEEAQDRA SKQLAVEAAQ AEKARDLSNE LYEIDQELEK
301: LREIVVQKCR KLSTQEKKGL SAALGRLSPE DLSKALKMVS EGNPHFPAGA PEVELDIDLQ SDVTLWRLKV FVQEALKAAN KSSGGGGTNA RNNNNGGEMN
401: KTAAKRRREI TEAIKANKVK KAKKA

Best Arabidopsis Sequence Match ( AT2G34900.1 )
(BLAST)

001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA

Arabidopsis Description

GTE1Transcription factor GTE1 [Source:UniProtKB/Swiss-Prot;Acc:Q84XV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.