CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008074.1-P	Field mustard	nucleus, plastid	99.49	99.49
CDX82101	Canola	nucleus	35.97	77.05
CDX82103	Canola	plastid	61.22	76.68
AT1G73150.1	Thale cress	plastid	75.26	63.99
CDY66497	Canola	nucleus	25.0	63.23
CDX83890	Canola	nucleus, plastid	57.4	61.48
CDX96751	Canola	nucleus, plastid	56.38	60.38
CDY26219	Canola	nucleus	28.57	60.22
CDY19175	Canola	nucleus, plastid	57.4	58.59
CDY26215	Canola	mitochondrion	60.71	57.49
CDY21732	Canola	cytosol	33.93	52.36
CDX81848	Canola	cytosol, nucleus, plastid	31.63	45.09
CDY15568	Canola	nucleus	33.16	41.01
GSMUA_Achr11P...	Banana	nucleus	40.05	37.12
GSMUA_Achr10P...	Banana	nucleus, plastid	40.56	35.57
Zm00001d008922_P001	Maize	plastid	42.35	33.88
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	43.62	33.27
TraesCS3D01G146600.1	Wheat	nucleus, plastid	42.86	33.2
TraesCS3B01G164100.1	Wheat	nucleus, plastid	43.11	33.14
TraesCS3A01G140500.1	Wheat	nucleus, plastid	42.6	32.75
CDY08771	Canola	nucleus	29.08	32.2
EES02258	Sorghum	plastid	36.48	32.06
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	24.74	31.19
GSMUA_Achr1P11660_001	Banana	nucleus	40.82	31.19
Os01t0214300-01	Rice	cytosol, nucleus	12.76	30.12
VIT_19s0014g01650.t01	Wine grape	nucleus	44.64	29.31
CDY65656	Canola	cytosol	15.31	28.99
CDY65645	Canola	nucleus, plastid	35.46	27.31
CDY09981	Canola	nucleus	41.07	25.2
CDY06203	Canola	nucleus	41.33	25.16
CDX70356	Canola	nucleus, plastid	15.31	24.29
Os02t0250300-01	Rice	nucleus	40.56	24.24
CDX78390	Canola	nucleus	14.54	23.85
TraesCS6D01G177700.1	Wheat	cytosol, plastid	38.52	23.78
HORVU6Hr1G045030.1	Barley	nucleus	38.27	23.7
HORVU6Hr1G045070.4	Barley	nucleus	38.27	23.58
Zm00001d016131_P006	Maize	nucleus	40.31	23.55
Solyc12g014170.1.1	Tomato	nucleus	42.09	23.54
PGSC0003DMT400039787	Potato	nucleus	41.33	23.01
OQU84709	Sorghum	nucleus	41.07	22.61
CDX86532	Canola	nucleus	40.05	22.27
PGSC0003DMT400032373	Potato	nucleus	41.33	21.86
Solyc07g062660.2.1	Tomato	nucleus	39.54	20.61
CDX70357	Canola	plastid	20.66	20.61
Zm00001d053427_P007	Maize	nucleus	35.71	20.5
CDX90608	Canola	cytosol	17.35	19.1
CDY29075	Canola	cytoskeleton, cytosol, nucleus	17.09	18.41
CDY31648	Canola	nucleus	19.9	18.35
CDY72432	Canola	cytosol	23.21	18.02
CDX84278	Canola	nucleus	19.9	17.81
CDY68605	Canola	cytosol	24.23	17.3
Zm00001d039369_P004	Maize	plastid	39.03	16.33
CDY20057	Canola	nucleus	25.77	15.66
CDY43984	Canola	endoplasmic reticulum	13.01	11.67
CDX84396	Canola	nucleus	17.35	11.09
CDY48139	Canola	nucleus	19.39	8.6
CDY13699	Canola	nucleus	9.95	8.53
CDY16729	Canola	nucleus	23.47	8.06
CDX83673	Canola	nucleus	9.44	7.43

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	UniProt:A0A078IB10	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
EnsemblPlants:CDY48040	ProteinID:CDY48040	ProteinID:CDY48040.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00088692001	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0004EE45FB
SEG:seg	:	:	:	:	:

Description

BnaA02g16330DBnaA02g16330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB10]

Coordinates

chrLK032750:-:117742..119167

Molecular Weight (calculated)

43831.9 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.606

Length

392 amino acids

Sequence
(BLAST)

001: MASGALVSKA KHKRSEISNK RLKPTTAVRP VSPSHSEMRK ITLNSISKLQ VRDLKRKLTA ELEKVRSLIN RLEPVPNKGG QGKAQILKSC NSLLTKLMKH
101: KFGWIFNTPV DAVKSGLHDY HTIVKKPMDL GTVKTRLSKS WYESPLEFAE DVRLTFNNAL LYNPVGHDVH RMAQFLLNMF EDKWAPLETQ CASLYNTHHY
201: VESLPLQAPP PVVVENRTLE RAESMTNPVE PLALTVSPEK CEEEEASGNR DLTFEEKRRL SEDLQDLPFD KLEEVVEIIK KTKPELAQQD DEIELDIDSL
301: DLQTLWELYR FVIGYKESLS NKKEEQRLGS ERDVESVQEP NTLVTGPEST KVTELGHVAS PAQQVNAGVS SSSSSGSGSS SDSDSDSSGH GS

Best Arabidopsis Sequence Match ( AT1G73150.1 )
(BLAST)

001: MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN
101: GGKKGGVHGA AADKGTVQIL KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE FAEDVRLTFN NAMLYNPVGH
201: DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE
301: EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES
401: NTLVTGLESS KVTELGHVAS TVRQEVNVGG SSSSNSSSSG SGSGSSGSDS DSSGHESDTG N

Arabidopsis Description

GTE3Transcription factor GTE3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.