Factsheet for GSMUA_Achr1P11660_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	42.3	51.3
CDY15568	Canola	nucleus	31.58	51.1
GSMUA_Achr10P...	Banana	nucleus, plastid	44.44	51.01
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	47.37	47.28
CDY66497	Canola	nucleus	13.26	43.87
CDX96751	Canola	nucleus, plastid	30.8	43.17
CDX83890	Canola	nucleus, plastid	30.8	43.17
Zm00001d008922_P001	Maize	plastid	40.94	42.86
Os01t0214300-01	Rice	cytosol, nucleus	13.84	42.77
CDX82101	Canola	nucleus	14.81	41.53
CDY26219	Canola	nucleus	15.01	41.4
Bra008074.1-P	Field mustard	nucleus, plastid	31.19	40.82
CDY48040	Canola	nucleus, plastid	31.19	40.82
TraesCS3D01G146600.1	Wheat	nucleus, plastid	40.16	40.71
CDY19175	Canola	nucleus, plastid	30.41	40.62
TraesCS3A01G140500.1	Wheat	nucleus, plastid	40.35	40.59
TraesCS3B01G164100.1	Wheat	nucleus, plastid	40.35	40.59
PGSC0003DMT400061991	Potato	cytoskeleton, cytosol, nucleus	24.17	39.87
CDX82103	Canola	plastid	24.17	39.62
EES02258	Sorghum	plastid	34.31	39.46
Bra016586.1-P	Field mustard	nucleus, plastid	32.94	38.41
VIT_19s0014g01650.t01	Wine grape	nucleus	43.86	37.69
Bra025948.1-P	Field mustard	mitochondrion	30.41	37.68
AT1G73150.1	Thale cress	plastid	33.72	37.53
CDY26215	Canola	mitochondrion	30.21	37.44
Bra031004.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	25.73	37.18
KRH27020	Soybean	nucleus	46.0	36.53
KRH22304	Soybean	nucleus	45.42	36.41
PGSC0003DMT400027387	Potato	nucleus	40.35	35.94
CDY21732	Canola	cytosol	16.96	34.25
VIT_12s0028g02510.t01	Wine grape	nucleus	43.47	34.1
AT1G17790.1	Thale cress	nucleus, plastid	31.58	33.26
Solyc10g008070.2.1	Tomato	nucleus	22.81	32.32
CDY09981	Canola	nucleus	39.96	32.08
CDY06203	Canola	nucleus	40.16	31.99
Bra032431.1-P	Field mustard	nucleus	40.16	31.35
GSMUA_Achr1P15650_001	Banana	nucleus	28.85	30.08
GSMUA_Achr3P00480_001	Banana	nucleus	30.6	30.08
PGSC0003DMT400039787	Potato	nucleus	40.35	29.4
Solyc12g014170.1.1	Tomato	nucleus	39.18	28.67
CDX86532	Canola	nucleus	39.18	28.51
Bra030643.1-P	Field mustard	nucleus	40.16	27.88
PGSC0003DMT400032373	Potato	nucleus	40.16	27.8
Bra015485.1-P	Field mustard	nucleus	39.96	27.37
CDX81848	Canola	cytosol, nucleus, plastid	14.23	26.55
AT1G06230.2	Thale cress	nucleus	39.18	26.24
Solyc07g062660.2.1	Tomato	nucleus	38.4	26.2
KRH25703	Soybean	nucleus	44.25	25.97
KRH55813	Soybean	nucleus	44.44	23.15
GSMUA_Achr8P29340_001	Banana	nucleus	17.35	22.76
Zm00001d039369_P004	Maize	plastid	38.01	20.81
CDY68605	Canola	cytosol	21.44	20.04
CDY72432	Canola	cytosol	19.49	19.8
GSMUA_Achr8P08920_001	Banana	nucleus	24.76	19.54
GSMUA_Achr10P...	Banana	nucleus	23.59	18.97
GSMUA_Achr8P01140_001	Banana	nucleus	26.32	17.98
GSMUA_Achr8P34430_001	Banana	nucleus	15.01	17.91
GSMUA_Achr3P02670_001	Banana	nucleus	23.78	17.3
GSMUA_Achr2P20970_001	Banana	nucleus	23.0	16.39
GSMUA_Achr3P02660_001	Banana	plasma membrane	20.86	16.36
GSMUA_Achr4P27780_001	Banana	nucleus	15.4	11.72

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G11660_001	EnsemblPlants:GSMUA_Achr1P11660_001	EnsemblPlants:GSMUA_Achr1T11660_001
InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	InterPro:IPR038336	UniProt:M0RZ25
InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF147	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI000295B9C3
SEG:seg	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_14.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G11660_001]

Coordinates

chr1:-:8914991..8917279

Molecular Weight (calculated)

56817.9 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.828

Length

513 amino acids

Sequence
(BLAST)

001: MASGPAAAAA AADDGDGISE TRRTPELKVY SRRRRGKNTP AADAQNPQPS SRETLATTTT TGDVDSSLQQ PPPPPPSPPE RHQFQRSASS GNEASSLNRH
101: EPEATPDPKG SAPHQQNGHV AVEDAKRSQG EARDLRRMLT AQLDQVRDLL KRLETREHQL SAIPSAGGGG SGVGAAPSQL SKIYANAFRS CRTLLDKLMK
201: HNFGWVFNKP VDVEGLGLYD YFSIIKHPMD LGTVQSRFAS NFYESPLEFA ADVRRTFQNA MLYNPKGQDV HVMAEQLLNV FEERWSLIET EFTEHLHQLH
301: LFSMRNPPSL DMRTLEMSSS TVQPMEIDMR PKPKANDINK RDMTFREKQT LRRHLESLPP EKLETVVQII KKRNSVLNLH DDEIEVDIDC VDAETLWELD
401: RFVTNYKKTL SKHKRKAELA MLARAEAERH NRERLNGEDP YPVVAEVPEQ VKNAVDQNKV AAPLTEAGAN NGNDESGSSG SSRSSSDSGS SDSDSDTESS
501: SSYESDAAHS PGN

Best Arabidopsis Sequence Match ( AT1G06230.2 )
(BLAST)

001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT

Arabidopsis Description

GTE4Transcription factor GTE4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.