Factsheet for GSMUA_Achr3P02670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr6P12110_001
GSMUA_Achr6P12420_001
GSMUA_Achr9P02050_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	GSMUA_Achr11P...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr6P12110_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr6P12420_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr9P02050_001	AT3G48360.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT3G48360.1	15316289
AT3G01770.1	GSMUA_Achr11P...	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr6P12110_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr6P12420_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_Achr9P02050_001	AT5G63160.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT5G63160.1	15316289
AT3G01770.1	GSMUA_AchrUn_...	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02660_001	Banana	plasma membrane	70.92	76.45
GSMUA_Achr2P20970_001	Banana	nucleus	48.79	47.78
GSMUA_Achr10P...	Banana	nucleus	42.41	46.87
Bra038624.1-P	Field mustard	nucleus	14.04	40.91
GSMUA_Achr8P01140_001	Banana	nucleus	41.99	39.41
VIT_17s0000g01830.t01	Wine grape	nucleus	41.7	38.94
GSMUA_Achr8P08920_001	Banana	nucleus	35.46	38.46
Bra025262.1-P	Field mustard	nucleus	28.23	36.78
VIT_14s0171g00380.t01	Wine grape	nucleus	38.44	36.77
KRH07021	Soybean	nucleus	38.16	36.16
KRH57199	Soybean	nucleus	37.87	36.13
TraesCS3A01G087800.1	Wheat	plastid	30.92	35.74
KRG94435	Soybean	nucleus	37.59	35.71
Os02t0601800-03	Rice	nucleus	36.03	35.57
PGSC0003DMT400052108	Potato	nucleus	36.6	35.39
HORVU3Hr1G015760.1	Barley	nucleus	27.23	34.78
Solyc02g093880.2.1	Tomato	nucleus	35.74	34.76
KRH63729	Soybean	nucleus	38.58	34.74
Solyc03g111090.2.1	Tomato	nucleus	38.44	34.7
KRH54219	Soybean	nucleus	38.72	34.64
CDY20057	Canola	nucleus	31.63	34.57
PGSC0003DMT400039290	Potato	nucleus	38.44	34.48
TraesCS6D01G196600.3	Wheat	nucleus	34.33	34.42
TraesCS3D01G087900.4	Wheat	nucleus	34.75	34.22
TraesCS6A01G214000.1	Wheat	nucleus	34.04	33.99
HORVU6Hr1G054560.16	Barley	nucleus	34.47	33.99
TraesCS3B01G103200.2	Wheat	nucleus	34.33	33.85
Bra039088.1-P	Field mustard	nucleus	31.21	33.79
TraesCS3B01G141400.2	Wheat	nucleus, plastid	34.04	33.66
Zm00001d017126_P001	Maize	nucleus	33.19	33.62
AT3G01770.1	Thale cress	nucleus	29.36	33.39
TraesCS3A01G122200.1	Wheat	nucleus	33.62	33.24
TraesCS3D01G124100.1	Wheat	nucleus	33.48	33.1
TraesCS6B01G244000.2	Wheat	plastid	33.76	33.06
HORVU3Hr1G022660.1	Barley	nucleus	33.19	32.87
EES07108	Sorghum	nucleus	33.05	32.77
KRH07022	Soybean	nucleus	35.6	31.93
AT5G14270.2	Thale cress	nucleus	30.78	31.49
Zm00001d035167_P001	Maize	nucleus	33.76	31.4
TraesCS7D01G309100.1	Wheat	nucleus	32.77	30.8
TraesCS7A01G312700.2	Wheat	nucleus	32.62	30.67
TraesCS7B01G212400.2	Wheat	nucleus	32.2	30.27
Zm00001d049638_P009	Maize	nucleus	33.33	30.24
KXG24325	Sorghum	nucleus	29.79	29.66
CDY13699	Canola	nucleus	19.15	29.54
HORVU7Hr1G074620.7	Barley	cytosol, mitochondrion, nucleus	32.34	29.27
AT3G27260.3	Thale cress	nucleus	32.77	28.1
CDX83673	Canola	nucleus	19.57	27.71
CDX84396	Canola	nucleus	23.83	27.41
GSMUA_Achr10P...	Banana	nucleus, plastid	15.89	25.06
GSMUA_Achr1P11660_001	Banana	nucleus	17.3	23.78
GSMUA_Achr1P15650_001	Banana	nucleus	16.31	23.37
AT5G63320.1	Thale cress	nucleus	34.18	22.71
GSMUA_Achr11P...	Banana	nucleus	13.62	22.7
GSMUA_Achr3P00480_001	Banana	nucleus	16.74	22.61
GSMUA_Achr7P09350_001	Banana	nucleus, plastid	16.31	22.37
CDY48139	Canola	nucleus	26.67	21.27
GSMUA_Achr4P27780_001	Banana	nucleus	19.43	20.33
GSMUA_Achr8P29340_001	Banana	nucleus	9.79	17.65
CDY16729	Canola	nucleus	27.94	17.25
Bra035848.1-P	Field mustard	nucleus	27.94	16.54
GSMUA_Achr8P34430_001	Banana	nucleus	9.79	16.05

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr3G02670_001	EnsemblPlants:GSMUA_Achr3P02670_001
EnsemblPlants:GSMUA_Achr3T02670_001	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353	InterPro:IPR036427	UniProt:M0SB85
InterPro:NET_dom	PFAM:PF00439	PFAM:PF17035	PRINTS:PR00503	PFscan:PS50014	PANTHER:PTHR22880
PANTHER:PTHR22880:SF228	SMART:SM00297	SUPFAM:SSF47370	TMHMM:TMhelix	UniParc:UPI00029489E6	SEG:seg

Description

Putative bromodomain domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G02670_001]

Coordinates

chr3:-:1750641..1754659

Molecular Weight (calculated)

78391.7 Da

IEP (calculated)

6.021

GRAVY (calculated)

-0.608

Length

705 amino acids

Sequence
(BLAST)

001: MKKSSQDRSS KAKGKPPRSA QGHGSGSIPD CQHDSKKMVE TEGSGSAIRA NSSGNSSSPK RKKCVDVTVD RCNGFNAPLE VISLSKKSGS KRKTPTMRLR
101: SEPDHIEMLR EKLPSKSVTT VGISTSSSIH GSEKIREQNI GPEMKGGLSG KSVPSKTAPM SDTYLALMKQ CETLLKKLLA HHFAWVFDHP VDAVKLNIPD
201: YHTIIKRPMD LGTIKSKLTS GAYSSPCGFA SDVRLTFKNA MTYNPPSDDV HIMAVTLSKF FESRWKFIEK KLAAADAHIE KETQSNKAEL SKKRKMSPPD
301: YNSPVPERKK SKMMDEENQS LNRCLESLLA DLSDHIIDFL SWQSGNMNQS IEEIKTHIDS FCDDTLFKLR TLLDNYIKER EVQQPVKTER VNDTGVCTSQ
401: MRPCKGNDLD DEDVDICDGD LPVPSYPPLE LQKDLGAATT EYSSSSGSSS DSGSSSGVIK TFKLDISISV VLYQENSGNK ACSDHEKSDI IKPFDVNRPL
501: SGLTPSEMDV DSKPLSVDSD GCQEGEHASS ERKVSSEKLY RAACLMSRFA DTILKAQKSL DQADRVDPET LQREREEIER QRREEGSGTS GLVTGMYLFP
601: FGDLFSISFV LCILLTLMQI LVTLLQMEKT VEIDDYHLVL KDLEILTRTP MSFDEKCPGH SLDDVEDFRF GGSNPMEQLG LFLKVYDEED EVDDIRRDRK
701: SSSSS

Best Arabidopsis Sequence Match ( AT5G14270.1 )
(BLAST)

001: MTERNGGFPG DYCFEAPGGD YDEGSDSPRV SEGSNCSKRK VGETFGVSKM VLPLSGLSSS DRKELIRRLR QELEQIRVFQ KNFELSRTVA LTSSSASGLT
101: RVKSFGMSRC STGPGKTVNP ISAASKPTPV TTAVMLLMKQ CEALLKRLMS HQYGWVFNTP VDVVKLNILD YFNVIEHPMD LGTVKNKLTS GTYSCPSEFA
201: ADVRLTFSNA MTYNPPGNDV YVMADTLRKF FEVRWKTLEK KLSGTKVHTE PSNLDAHKEK HIVIPVPMAK KRKTTAVDCE NVVDPAKRVM TDEDRLKLGK
301: DLESLTEFPA QLINFLRDHN SNEGGIGDDE IEIDINDLSD HALFQLRDLL DEHLREIQNK KSSVEPCEIE LLHGSVPGNS SMQHCDGSEL DDEVVDIGEN
401: EHPTSSISPV TIEKDLVLGN SNGNSLGSVS GDPKMSSLPR ASKGLGTIDL EPMLDGATSA SPTRGSSVGG LDQLESASPE KISSVEADCQ QDGNSAQNEK
501: QLPPEKSYRA AILKNRFADI ILKAREKPLN QNDTRDPEKL QREREELELQ KKKEKARLQA EAKAAEEARR KAEAQAAAEA AAEAKRKLEL EREAARQALM
601: EMEQSVELNE NAKFLEDLEL LKTVDTDHLT NTIEEEDGPD VGLRSFSFGG SNPLEQLGLF MKQDEDEEEA DPLTSPAPEI DIEEGEID

Arabidopsis Description

BET9Bromodomain and extraterminal domain protein 9 [Source:UniProtKB/TrEMBL;Acc:F4K6Q7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.