Factsheet for GSMUA_Achr6P12420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr2P20970_001
GSMUA_Achr3P02660_001
GSMUA_Achr3P02670_001
GSMUA_Achr6P25560_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P01140_001
GSMUA_Achr8P08920_001
GSMUA_Achr8P16990_001
GSMUA_Achr9P08680_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	GSMUA_Achr7P18000_001	AT1G26830.1	15772280
AT3G48360.1	GSMUA_Achr8P16990_001	AT1G26830.1	15772280
AT3G48360.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT3G48360.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT3G48360.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT3G48360.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT3G48360.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT3G48360.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT3G48360.1	GSMUA_Achr10P...	AT3G01770.1	15316289
AT3G48360.1	GSMUA_Achr2P20970_001	AT3G01770.1	15316289
AT3G48360.1	GSMUA_Achr3P02660_001	AT3G01770.1	15316289
AT3G48360.1	GSMUA_Achr3P02670_001	AT3G01770.1	15316289
AT3G48360.1	GSMUA_Achr8P01140_001	AT3G01770.1	15316289
AT3G48360.1	GSMUA_Achr8P08920_001	AT3G01770.1	15316289
AT3G48360.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT3G48360.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT3G48360.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT3G48360.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088
AT5G63160.1	GSMUA_Achr7P18000_001	AT1G26830.1	15772280
AT5G63160.1	GSMUA_Achr8P16990_001	AT1G26830.1	15772280
AT5G63160.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT5G63160.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT5G63160.1	GSMUA_Achr10P...	AT3G01770.1	15316289
AT5G63160.1	GSMUA_Achr2P20970_001	AT3G01770.1	15316289
AT5G63160.1	GSMUA_Achr3P02660_001	AT3G01770.1	15316289
AT5G63160.1	GSMUA_Achr3P02670_001	AT3G01770.1	15316289
AT5G63160.1	GSMUA_Achr8P01140_001	AT3G01770.1	15316289
AT5G63160.1	GSMUA_Achr8P08920_001	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	54.3	56.9
GSMUA_AchrUn_...	Banana	nucleus	51.34	55.52
KRH57174	Soybean	cytosol	29.3	49.32
Os01t0908200-01	Rice	cytosol	44.09	47.26
Zm00001d042443_P001	Maize	cytosol	43.55	47.09
EES01931	Sorghum	cytosol	43.55	46.42
GSMUA_Achr6P12110_001	Banana	nucleus	42.74	45.95
PGSC0003DMT400069397	Potato	nucleus	41.13	45.95
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	43.01	45.33
GSMUA_Achr9P02050_001	Banana	cytosol	41.4	45.16
KRH03892	Soybean	cytosol	41.67	44.8
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	23.39	44.16
Solyc06g071820.2.1	Tomato	nucleus	41.4	44.13
TraesCS3A01G413600.1	Wheat	cytosol, plastid	40.59	43.39
TraesCS3B01G448000.1	Wheat	cytosol, plastid	40.32	43.35
TraesCS3D01G408100.1	Wheat	cytosol, plastid	40.59	43.27
TraesCS3B01G448100.1	Wheat	plastid	40.86	43.18
TraesCS3A01G413700.1	Wheat	cytosol, plastid	40.59	43.02
TraesCS3D01G408000.1	Wheat	plastid	40.59	42.78
CDY41504	Canola	nucleus	38.17	42.77
VIT_17s0000g09790.t01	Wine grape	cytosol	39.52	42.36
Bra029235.1-P	Field mustard	nucleus	41.4	41.85
Bra038612.1-P	Field mustard	nucleus	40.59	41.6
KRH63672	Soybean	nucleus	36.56	41.59
PGSC0003DMT400039384	Potato	nucleus	38.44	41.45
CDX84392	Canola	nucleus	40.32	41.44
Solyc03g111710.2.1	Tomato	nucleus	38.17	41.16
PGSC0003DMT400069392	Potato	nucleus	38.44	40.97
AT3G48360.1	Thale cress	nucleus	40.05	40.93
AT5G63160.1	Thale cress	nucleus	40.05	40.82
CDY48173	Canola	nucleus	39.78	40.77
Solyc06g071830.2.1	Tomato	nucleus	36.29	40.54
Bra018065.1-P	Field mustard	nucleus	40.05	39.42
CDY45741	Canola	nucleus	41.94	39.29
CDY39576	Canola	nucleus	38.71	39.24
CDY30743	Canola	nucleus	41.67	39.04
KRH37914	Soybean	cytosol	9.95	37.0
CDY70710	Canola	nucleus	15.32	36.31
GSMUA_Achr6P24750_001	Banana	nucleus	32.26	31.58
GSMUA_Achr6P18360_001	Banana	plastid	29.57	28.8

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G12420_001	EnsemblPlants:GSMUA_Achr6P12420_001
EnsemblPlants:GSMUA_Achr6T12420_001	InterPro:IPR000197	InterPro:IPR000210	InterPro:IPR035898	UniProt:M0T6E0	PFAM:PF00651
PFAM:PF02135	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI000295D34E
InterPro:Znf_TAZ	SEG:seg	:	:	:	:

Description

BTBZ2 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G12420_001]

Coordinates

chr6:-:8303323..8305099

Molecular Weight (calculated)

42645.5 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.444

Length

372 amino acids

Sequence
(BLAST)

001: MHAATTAYHW HGIMEEEEQQ HGETLVSPTG FRRWLEAGND DTPPTDARIV TSGQRRLPAH STVLASASPV LESMLHRPRK GGSNREMEIP VLGVPCDAVH
101: AFLRLLYSAR CVTLAEEEIV GEHGMHLMVL SHAYGVGWLK RACERVLSSR LTAEGVVDVL VLAQQCDAPR LHLRCMQLLA EDFAAVEQTE AWRFLRDHDP
201: WLELDILQFL EDAHLRRRRL GRRKAERRLY MELHETIECL HHIFKDGYAA MGHSGREEKR ARCPNPVTCR GLRQLVRHLA ACDSEKRRWC RRCKCLWQLL
301: RLHASTCTEL DDASCEVPLC MQFKRRVQRR EGEEADGDDK WGMLVKKVVS ARVVSHLVKK HKQPVLYPGD SN

Best Arabidopsis Sequence Match ( AT3G48360.1 )
(BLAST)

001: MEAVLVAMSV PATTEDDGFS LITDKLSYNL TPTSDVEIVT SDNRRIPAHS GVLASASPVL MNIMKKPMRR YRGCGSKRVI KILGVPCDAV SVFIKFLYSS
101: SLTEDEMERY GIHLLALSHV YMVTQLKQRC SKGVVQRLTT ENVVDVLQLA RLCDAPDVCL RSMRLIHSQF KTVEQTEGWK FIQEHDPFLE LDILQFIDDA
201: ESRKKRRRRH RKEQDLYMQL SEAMECIEHI CTQGCTLVGP SNVVDNNKKS MTAEKSEPCK AFSTCYGLQL LIRHFAVCKR RNNDKGCLRC KRMLQLFRLH
301: SLICDQPDSC RVPLCRQFRK RGEQDKKMGE DTKWKLLVTR VVSAKAMTSL CQSKKNKCEQ AQGV

Arabidopsis Description

BT2BTB/POZ and TAZ domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.