Factsheet for PGSC0003DMT400039384

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400016765
PGSC0003DMT400052108
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT3G48360.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT3G48360.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT3G48360.1	PGSC0003DMT400052108	AT3G01770.1	15316289
AT3G48360.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G48360.1	PGSC0003DMT400067082	AT4G09570.1	19130088
AT5G63160.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT5G63160.1	PGSC0003DMT400052108	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111710.2.1	Tomato	nucleus	97.39	97.39
PGSC0003DMT400069397	Potato	nucleus	76.81	79.58
PGSC0003DMT400069392	Potato	nucleus	73.62	72.78
VIT_17s0000g09790.t01	Wine grape	cytosol	66.38	65.99
KRH63672	Soybean	nucleus	55.07	58.1
CDY41504	Canola	nucleus	55.65	57.83
AT5G63160.1	Thale cress	nucleus	60.0	56.71
KRH57174	Soybean	cytosol	36.23	56.56
Bra029235.1-P	Field mustard	nucleus	60.29	56.52
KRH03892	Soybean	cytosol	55.94	55.78
Bra038612.1-P	Field mustard	nucleus	58.55	55.65
CDX84392	Canola	nucleus	58.26	55.52
AT3G48360.1	Thale cress	nucleus	56.81	53.85
CDY48173	Canola	nucleus	56.52	53.72
CDY70710	Canola	nucleus	24.35	53.5
Bra018065.1-P	Field mustard	nucleus	57.68	52.65
CDY39576	Canola	nucleus	55.94	52.59
CDY30743	Canola	nucleus	60.0	52.14
CDY45741	Canola	nucleus	59.71	51.89
GSMUA_Achr11P...	Banana	nucleus	49.86	48.45
GSMUA_AchrUn_...	Banana	nucleus	47.25	47.38
GSMUA_Achr9P02050_001	Banana	cytosol	46.67	47.21
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	47.83	46.74
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	26.38	46.19
KRH37914	Soybean	cytosol	13.33	46.0
Os01t0908200-01	Rice	cytosol	45.8	45.53
Zm00001d042443_P001	Maize	cytosol	44.93	45.06
EES01931	Sorghum	cytosol	44.64	44.13
TraesCS3B01G448000.1	Wheat	cytosol, plastid	42.9	42.77
TraesCS3D01G408100.1	Wheat	cytosol, plastid	43.19	42.69
HORVU2Hr1G083410.1	Barley	cytosol	9.86	42.5
TraesCS2D01G339900.1	Wheat	cytosol	41.74	42.48
TraesCS3A01G413600.1	Wheat	cytosol, plastid	42.61	42.24
TraesCS2A01G323000.1	Wheat	cytosol	41.45	42.18
TraesCS3B01G448100.1	Wheat	plastid	42.9	42.05
TraesCS3D01G408000.1	Wheat	plastid	42.9	41.93
GSMUA_Achr6P12110_001	Banana	nucleus	42.03	41.91
TraesCS2B01G359600.1	Wheat	cytosol	41.16	41.89
Os04t0482300-01	Rice	cytosol	42.61	41.41
Zm00001d025707_P001	Maize	cytosol	40.87	41.35
TraesCS2B01G359400.1	Wheat	cytosol	40.29	40.17
TraesCS3A01G413700.1	Wheat	cytosol, plastid	40.58	39.89
TraesCS2A01G323200.1	Wheat	cytosol	39.71	39.6
GSMUA_Achr6P12420_001	Banana	nucleus	41.45	38.44
EES05370	Sorghum	plastid	39.42	38.2
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	40.0	38.12
TraesCS2D01G339700.1	Wheat	cytosol	40.29	36.68
Zm00001d017101_P001	Maize	plastid	37.97	35.5
PGSC0003DMT400055194	Potato	nucleus	38.26	34.92
PGSC0003DMT400064939	Potato	nucleus	40.29	34.49
HORVU2Hr1G083430.3	Barley	nucleus	13.62	26.86
PGSC0003DMT400013718	Potato	cytosol	20.29	26.52
HORVU2Hr1G083490.1	Barley	extracellular	5.51	21.84
Os02t0596700-00	Rice	plastid	14.78	17.11

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	EntrezGene:102602068	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	UniProt:M1B874	PFAM:PF00651	PFAM:PF02135	EnsemblPlantsGene:PGSC0003DMG400015229
PGSC:PGSC0003DMG400015229	EnsemblPlants:PGSC0003DMT400039384	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf
UniParc:UPI0002950D6D	RefSeq:XP_006351442.1	InterPro:Znf_TAZ	SEG:seg	:	:

Description

BTB/POZ domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015229]

Coordinates

chr3:+:51365624..51368593

Molecular Weight (calculated)

39523.4 Da

IEP (calculated)

9.121

GRAVY (calculated)

-0.430

Length

345 amino acids

Sequence
(BLAST)

001: MSPNNFDAGE MPEFDIQIIT SGGHRIPAHS TVLASASSVL ESILVRPQKK RSSEKTIRIL GVPCDAVSVF VQFLSSFKCT KEQMKKHGIH LLALSHVYLV
101: PQLKQRCTKG LAEQLTIENA VDMLQLARLC DAPDLYLKCL KLISTNFKKT EKTEGWKFLL DHDPQLELEI LQFMDEADSR KKRTRRHRRE QNLYLQLSEA
201: MDCIEHICTE GCTSVGPCGE EPCTKKLPCS KFKTCQGVQL LIRHFATCKR RVNGGCLRCK RMWQLLRLHS SICDQPDECR VPLCRQFKEK VQRKGDDGLW
301: KSLVEKVVSA RALSSLSLPK RKREEEPKMN LHHHQVRSFL TTQCH

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.