Factsheet for PGSC0003DMT400069397

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400016765
PGSC0003DMT400052108
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT3G48360.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT3G48360.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT3G48360.1	PGSC0003DMT400052108	AT3G01770.1	15316289
AT3G48360.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G48360.1	PGSC0003DMT400067082	AT4G09570.1	19130088
AT5G63160.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT5G63160.1	PGSC0003DMT400052108	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071820.2.1	Tomato	nucleus	96.1	91.69
PGSC0003DMT400039384	Potato	nucleus	79.58	76.81
PGSC0003DMT400069392	Potato	nucleus	75.68	72.21
VIT_17s0000g09790.t01	Wine grape	cytosol	67.87	65.13
KRH57174	Soybean	cytosol	39.64	59.73
KRH63672	Soybean	nucleus	58.56	59.63
CDY41504	Canola	nucleus	57.96	58.13
KRH03892	Soybean	cytosol	60.06	57.8
Bra029235.1-P	Field mustard	nucleus	62.46	56.52
Bra038612.1-P	Field mustard	nucleus	61.56	56.47
CDX84392	Canola	nucleus	61.26	56.35
CDY48173	Canola	nucleus	60.66	55.65
AT5G63160.1	Thale cress	nucleus	60.96	55.62
AT3G48360.1	Thale cress	nucleus	60.36	55.22
Bra018065.1-P	Field mustard	nucleus	60.36	53.17
CDY39576	Canola	nucleus	58.26	52.86
CDY70710	Canola	nucleus	24.62	52.23
CDY30743	Canola	nucleus	61.86	51.89
CDY45741	Canola	nucleus	61.56	51.64
KRH37914	Soybean	cytosol	14.41	48.0
GSMUA_AchrUn_...	Banana	nucleus	49.55	47.97
GSMUA_Achr11P...	Banana	nucleus	51.05	47.89
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	50.45	47.59
GSMUA_Achr9P02050_001	Banana	cytosol	47.45	46.33
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	27.03	45.69
HORVU2Hr1G083410.1	Barley	cytosol	10.81	45.0
Os01t0908200-01	Rice	cytosol	46.55	44.67
Zm00001d042443_P001	Maize	cytosol	45.65	44.19
TraesCS2D01G339900.1	Wheat	cytosol	44.14	43.36
TraesCS2A01G323000.1	Wheat	cytosol	44.14	43.36
EES01931	Sorghum	cytosol	45.35	43.27
TraesCS3D01G408100.1	Wheat	cytosol, plastid	45.35	43.27
GSMUA_Achr6P12110_001	Banana	nucleus	44.74	43.06
TraesCS3A01G413600.1	Wheat	cytosol, plastid	44.74	42.82
TraesCS3B01G448000.1	Wheat	cytosol, plastid	44.14	42.49
TraesCS2B01G359600.1	Wheat	cytosol	43.24	42.48
TraesCS3B01G448100.1	Wheat	plastid	44.74	42.33
TraesCS3D01G408000.1	Wheat	plastid	44.74	42.21
Zm00001d025707_P001	Maize	cytosol	42.64	41.64
Os04t0482300-01	Rice	cytosol	44.14	41.41
GSMUA_Achr6P12420_001	Banana	nucleus	45.95	41.13
TraesCS2A01G323200.1	Wheat	cytosol	42.34	40.75
TraesCS2B01G359400.1	Wheat	cytosol	42.34	40.75
TraesCS3A01G413700.1	Wheat	cytosol, plastid	42.64	40.46
EES05370	Sorghum	plastid	42.64	39.89
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	42.34	38.95
TraesCS2D01G339700.1	Wheat	cytosol	42.94	37.73
Zm00001d017101_P001	Maize	plastid	40.84	36.86
PGSC0003DMT400055194	Potato	nucleus	41.14	36.24
PGSC0003DMT400064939	Potato	nucleus	42.64	35.24
HORVU2Hr1G083430.3	Barley	nucleus	15.62	29.71
PGSC0003DMT400013718	Potato	cytosol	21.02	26.52
HORVU2Hr1G083490.1	Barley	extracellular	6.91	26.44
Os02t0596700-00	Rice	plastid	15.92	17.79

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000197	InterPro:IPR000210
InterPro:IPR035898	UniProt:M1CKE0	PFAM:PF00651	PFAM:PF02135	EnsemblPlantsGene:PGSC0003DMG402026984	PGSC:PGSC0003DMG402026984
EnsemblPlants:PGSC0003DMT400069397	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI000294805B
InterPro:Znf_TAZ	SEG:seg	:	:	:	:

Description

BTB/POZ domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402026984]

Coordinates

chr6:-:52624883..52628258

Molecular Weight (calculated)

38321.2 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.326

Length

333 amino acids

Sequence
(BLAST)

001: MSEVDIQIVT SGGLRIPAHS AVLAAASAVL ENILVRPGKR RSSERTIRIL GVPCDAVSVF IRFLYSFKCT EEQMKRHGIH LLALSHVYLV PQLKQRCTKG
101: LAERLTIENA VDVLQLARLC DAPDLYLKSM KFLSSNFKKV EETEGWKFLQ HHDPWLELEI LQFMDEAELR KKRTRRHKRE LSLYLQLSEA MDCLEHICTE
201: GCTSVGPLDK EPSIKRQPCS KFDTCQGLQL LIRHFATCKR RTKGGCLRCK RMWQILRLHA SICDQPNDCQ VPLCRQFKLK VQQKGDDELW KSLVRKVVSA
301: RAMSSLSLPK RKREEEPKMD LSHPQVMNFR LAA

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.