Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400039384 | |
PGSC0003DMT400069392 | |
PGSC0003DMT400069397 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc02g093880.2.1 | Tomato | nucleus | 93.14 | 93.66 |
VIT_14s0171g00380.t01 | Wine grape | nucleus | 59.53 | 58.89 |
KRH07021 | Soybean | nucleus | 58.44 | 57.26 |
KRG94435 | Soybean | nucleus | 57.61 | 56.6 |
Bra025262.1-P | Field mustard | nucleus | 41.98 | 56.56 |
CDY13699 | Canola | nucleus | 33.33 | 53.17 |
KRH07022 | Soybean | nucleus | 54.73 | 50.76 |
Bra039088.1-P | Field mustard | nucleus | 45.27 | 50.69 |
CDY20057 | Canola | nucleus | 44.58 | 50.39 |
CDX83673 | Canola | nucleus | 33.06 | 48.39 |
AT3G01770.1 | Thale cress | nucleus | 40.05 | 47.1 |
AT5G14270.2 | Thale cress | nucleus | 44.31 | 46.88 |
GSMUA_Achr8P01140_001 | Banana | nucleus | 47.19 | 45.81 |
PGSC0003DMT400039290 | Potato | nucleus | 49.11 | 45.55 |
GSMUA_Achr2P20970_001 | Banana | nucleus | 43.62 | 44.17 |
AT3G27260.3 | Thale cress | nucleus | 48.7 | 43.19 |
GSMUA_Achr8P08920_001 | Banana | nucleus | 38.27 | 42.92 |
GSMUA_Achr10P... | Banana | nucleus | 36.76 | 42.01 |
GSMUA_Achr3P02660_001 | Banana | plasma membrane | 37.31 | 41.59 |
TraesCS3A01G087800.1 | Wheat | plastid | 34.16 | 40.82 |
TraesCS6D01G196600.3 | Wheat | nucleus | 38.82 | 40.26 |
TraesCS6A01G214000.1 | Wheat | nucleus | 38.68 | 39.94 |
Os02t0601800-03 | Rice | nucleus | 38.96 | 39.78 |
TraesCS7D01G309100.1 | Wheat | nucleus | 40.74 | 39.6 |
TraesCS7A01G312700.2 | Wheat | nucleus | 40.6 | 39.47 |
TraesCS6B01G244000.2 | Wheat | plastid | 38.82 | 39.31 |
HORVU6Hr1G054560.16 | Barley | nucleus | 38.41 | 39.16 |
TraesCS7B01G212400.2 | Wheat | nucleus | 40.05 | 38.93 |
EES07108 | Sorghum | nucleus | 37.86 | 38.82 |
TraesCS3B01G103200.2 | Wheat | nucleus | 38.0 | 38.74 |
TraesCS3D01G087900.4 | Wheat | nucleus | 38.0 | 38.69 |
TraesCS3B01G141400.2 | Wheat | nucleus, plastid | 37.72 | 38.57 |
KXG24325 | Sorghum | nucleus | 37.45 | 38.56 |
TraesCS3D01G124100.1 | Wheat | nucleus | 37.31 | 38.15 |
TraesCS3A01G122200.1 | Wheat | nucleus | 37.04 | 37.87 |
Zm00001d035167_P001 | Maize | nucleus | 39.09 | 37.6 |
Zm00001d017126_P001 | Maize | nucleus | 35.8 | 37.5 |
HORVU7Hr1G074620.7 | Barley | cytosol, mitochondrion, nucleus | 40.05 | 37.48 |
HORVU3Hr1G022660.1 | Barley | nucleus | 36.21 | 37.08 |
GSMUA_Achr3P02670_001 | Banana | nucleus | 35.39 | 36.6 |
Zm00001d049638_P009 | Maize | nucleus | 37.04 | 34.75 |
HORVU3Hr1G015760.1 | Barley | nucleus | 26.06 | 34.42 |
PGSC0003DMT400018643 | Potato | nucleus | 26.34 | 31.68 |
PGSC0003DMT400061991 | Potato | cytoskeleton, cytosol, nucleus | 9.05 | 21.22 |
PGSC0003DMT400027387 | Potato | nucleus | 16.74 | 21.18 |
PGSC0003DMT400008041 | Potato | nucleus | 17.01 | 20.6 |
PGSC0003DMT400078795 | Potato | nucleus | 16.46 | 20.27 |
PGSC0003DMT400044321 | Potato | nucleus | 9.74 | 18.83 |
PGSC0003DMT400061998 | Potato | cytosol | 2.74 | 17.09 |
PGSC0003DMT400032373 | Potato | nucleus | 17.15 | 16.87 |
PGSC0003DMT400039787 | Potato | nucleus | 15.5 | 16.05 |
Protein Annotations
Gene3D:1.20.1270.220 | Gene3D:1.20.920.10 | EntrezGene:102597253 | MapMan:15.5.54 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf |
ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GTE_bromo | InterPro:IPR001487 |
InterPro:IPR027353 | InterPro:IPR036427 | InterPro:IPR038336 | UniProt:M1BST9 | InterPro:NET_dom | InterPro:NET_sf |
PFAM:PF00439 | PFAM:PF17035 | EnsemblPlantsGene:PGSC0003DMG400020226 | PGSC:PGSC0003DMG400020226 | EnsemblPlants:PGSC0003DMT400052108 | PRINTS:PR00503 |
PFscan:PS50014 | PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF228 | SMART:SM00297 | SUPFAM:SSF47370 |
UniParc:UPI000296B6FF | RefSeq:XP_006338672.1 | RefSeq:XP_006338673.1 | SEG:seg | : | : |
Description
Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020226]
Coordinates
chr2:-:47777141..47786304
Molecular Weight (calculated)
80045.5 Da
IEP (calculated)
4.887
GRAVY (calculated)
-0.733
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKDKLRGG GSAGFATNCG SEGSGSSGRF DAGISVSGHS IAPQQRWINI NSSSHDGFAV PIHVILQSKL SPSERKNLVL QLRSDIEQIR LLQKKVEFYR
101: TSVIAVSSSS DIVSCSNAQK GLPLASKKKS TGNPGFGKKS NPLAQKTRGL SREVSGRFKS VKPTSVPSRS NAALMKQCEN LLKKLLSHHN AGVFNKPVDV
201: VKLNIPDYFT VIKHPMDLGT IKKRLTSGAY SSPLEFLADV RLTFSNALTY NPPGNIVNVM ADEMSKFFEL RWKTIEKKLP TNDAELVEEK SGLHEENGTA
301: SKKRRLSPTQ HVVMPELPKS KMTDEEKHKL GGELEASLGD LPDNILEFLK ELSSNGTATG ENGEDGEDAI EIDIDILSDD TLFTLRALLD KFLQEKQKGN
401: ARAEPCEIEL PNGLGLSNSS MHLEGDNNHV DEEVDIGGNE PPVSSYPSLE IEKDTDPKRD ERINTGGPND SDSSSSSDDE SETQRTPDHA EQDHSSPVKA
501: DGKEAGNSLA EGNHSISGVD QLDQSSQQMP FSVESEAYQD GESRVSPGKL YRAALLKNRF ADTILKAREK TLVEVEKGDP EKLRREREEL EMQRRKAKAK
601: LQAEAKAAEE AQRRAEVEAA AEAKRRREVD REAARQALLQ MEKTVEINEN SKFLEDLEML TAVPSEQLHS SVDETSPDHS QDGLGSFKFG GSNPLEQLGL
701: YMKVDDDEEE CELATLPSDP IDVEEGEID
101: TSVIAVSSSS DIVSCSNAQK GLPLASKKKS TGNPGFGKKS NPLAQKTRGL SREVSGRFKS VKPTSVPSRS NAALMKQCEN LLKKLLSHHN AGVFNKPVDV
201: VKLNIPDYFT VIKHPMDLGT IKKRLTSGAY SSPLEFLADV RLTFSNALTY NPPGNIVNVM ADEMSKFFEL RWKTIEKKLP TNDAELVEEK SGLHEENGTA
301: SKKRRLSPTQ HVVMPELPKS KMTDEEKHKL GGELEASLGD LPDNILEFLK ELSSNGTATG ENGEDGEDAI EIDIDILSDD TLFTLRALLD KFLQEKQKGN
401: ARAEPCEIEL PNGLGLSNSS MHLEGDNNHV DEEVDIGGNE PPVSSYPSLE IEKDTDPKRD ERINTGGPND SDSSSSSDDE SETQRTPDHA EQDHSSPVKA
501: DGKEAGNSLA EGNHSISGVD QLDQSSQQMP FSVESEAYQD GESRVSPGKL YRAALLKNRF ADTILKAREK TLVEVEKGDP EKLRREREEL EMQRRKAKAK
601: LQAEAKAAEE AQRRAEVEAA AEAKRRREVD REAARQALLQ MEKTVEINEN SKFLEDLEML TAVPSEQLHS SVDETSPDHS QDGLGSFKFG GSNPLEQLGL
701: YMKVDDDEEE CELATLPSDP IDVEEGEID
001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
Arabidopsis Description
GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.