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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g093880.2.1 Tomato nucleus 93.14 93.66
VIT_14s0171g00380.t01 Wine grape nucleus 59.53 58.89
KRH07021 Soybean nucleus 58.44 57.26
KRG94435 Soybean nucleus 57.61 56.6
Bra025262.1-P Field mustard nucleus 41.98 56.56
CDY13699 Canola nucleus 33.33 53.17
KRH07022 Soybean nucleus 54.73 50.76
Bra039088.1-P Field mustard nucleus 45.27 50.69
CDY20057 Canola nucleus 44.58 50.39
CDX83673 Canola nucleus 33.06 48.39
AT3G01770.1 Thale cress nucleus 40.05 47.1
AT5G14270.2 Thale cress nucleus 44.31 46.88
GSMUA_Achr8P01140_001 Banana nucleus 47.19 45.81
PGSC0003DMT400039290 Potato nucleus 49.11 45.55
GSMUA_Achr2P20970_001 Banana nucleus 43.62 44.17
AT3G27260.3 Thale cress nucleus 48.7 43.19
GSMUA_Achr8P08920_001 Banana nucleus 38.27 42.92
GSMUA_Achr10P... Banana nucleus 36.76 42.01
GSMUA_Achr3P02660_001 Banana plasma membrane 37.31 41.59
TraesCS3A01G087800.1 Wheat plastid 34.16 40.82
TraesCS6D01G196600.3 Wheat nucleus 38.82 40.26
TraesCS6A01G214000.1 Wheat nucleus 38.68 39.94
Os02t0601800-03 Rice nucleus 38.96 39.78
TraesCS7D01G309100.1 Wheat nucleus 40.74 39.6
TraesCS7A01G312700.2 Wheat nucleus 40.6 39.47
TraesCS6B01G244000.2 Wheat plastid 38.82 39.31
HORVU6Hr1G054560.16 Barley nucleus 38.41 39.16
TraesCS7B01G212400.2 Wheat nucleus 40.05 38.93
EES07108 Sorghum nucleus 37.86 38.82
TraesCS3B01G103200.2 Wheat nucleus 38.0 38.74
TraesCS3D01G087900.4 Wheat nucleus 38.0 38.69
TraesCS3B01G141400.2 Wheat nucleus, plastid 37.72 38.57
KXG24325 Sorghum nucleus 37.45 38.56
TraesCS3D01G124100.1 Wheat nucleus 37.31 38.15
TraesCS3A01G122200.1 Wheat nucleus 37.04 37.87
Zm00001d035167_P001 Maize nucleus 39.09 37.6
Zm00001d017126_P001 Maize nucleus 35.8 37.5
HORVU7Hr1G074620.7 Barley cytosol, mitochondrion, nucleus 40.05 37.48
HORVU3Hr1G022660.1 Barley nucleus 36.21 37.08
GSMUA_Achr3P02670_001 Banana nucleus 35.39 36.6
Zm00001d049638_P009 Maize nucleus 37.04 34.75
HORVU3Hr1G015760.1 Barley nucleus 26.06 34.42
PGSC0003DMT400018643 Potato nucleus 26.34 31.68
PGSC0003DMT400061991 Potato cytoskeleton, cytosol, nucleus 9.05 21.22
PGSC0003DMT400027387 Potato nucleus 16.74 21.18
PGSC0003DMT400008041 Potato nucleus 17.01 20.6
PGSC0003DMT400078795 Potato nucleus 16.46 20.27
PGSC0003DMT400044321 Potato nucleus 9.74 18.83
PGSC0003DMT400061998 Potato cytosol 2.74 17.09
PGSC0003DMT400032373 Potato nucleus 17.15 16.87
PGSC0003DMT400039787 Potato nucleus 15.5 16.05
Protein Annotations
Gene3D:1.20.1270.220Gene3D:1.20.920.10EntrezGene:102597253MapMan:15.5.54InterPro:BromodomainInterPro:Bromodomain-like_sf
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:GTE_bromoInterPro:IPR001487
InterPro:IPR027353InterPro:IPR036427InterPro:IPR038336UniProt:M1BST9InterPro:NET_domInterPro:NET_sf
PFAM:PF00439PFAM:PF17035EnsemblPlantsGene:PGSC0003DMG400020226PGSC:PGSC0003DMG400020226EnsemblPlants:PGSC0003DMT400052108PRINTS:PR00503
PFscan:PS50014PFscan:PS51525PANTHER:PTHR22880PANTHER:PTHR22880:SF228SMART:SM00297SUPFAM:SSF47370
UniParc:UPI000296B6FFRefSeq:XP_006338672.1RefSeq:XP_006338673.1SEG:seg::
Description
Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020226]
Coordinates
chr2:-:47777141..47786304
Molecular Weight (calculated)
80045.5 Da
IEP (calculated)
4.887
GRAVY (calculated)
-0.733
Length
729 amino acids
Sequence
(BLAST)
001: MARKDKLRGG GSAGFATNCG SEGSGSSGRF DAGISVSGHS IAPQQRWINI NSSSHDGFAV PIHVILQSKL SPSERKNLVL QLRSDIEQIR LLQKKVEFYR
101: TSVIAVSSSS DIVSCSNAQK GLPLASKKKS TGNPGFGKKS NPLAQKTRGL SREVSGRFKS VKPTSVPSRS NAALMKQCEN LLKKLLSHHN AGVFNKPVDV
201: VKLNIPDYFT VIKHPMDLGT IKKRLTSGAY SSPLEFLADV RLTFSNALTY NPPGNIVNVM ADEMSKFFEL RWKTIEKKLP TNDAELVEEK SGLHEENGTA
301: SKKRRLSPTQ HVVMPELPKS KMTDEEKHKL GGELEASLGD LPDNILEFLK ELSSNGTATG ENGEDGEDAI EIDIDILSDD TLFTLRALLD KFLQEKQKGN
401: ARAEPCEIEL PNGLGLSNSS MHLEGDNNHV DEEVDIGGNE PPVSSYPSLE IEKDTDPKRD ERINTGGPND SDSSSSSDDE SETQRTPDHA EQDHSSPVKA
501: DGKEAGNSLA EGNHSISGVD QLDQSSQQMP FSVESEAYQD GESRVSPGKL YRAALLKNRF ADTILKAREK TLVEVEKGDP EKLRREREEL EMQRRKAKAK
601: LQAEAKAAEE AQRRAEVEAA AEAKRRREVD REAARQALLQ MEKTVEINEN SKFLEDLEML TAVPSEQLHS SVDETSPDHS QDGLGSFKFG GSNPLEQLGL
701: YMKVDDDEEE CELATLPSDP IDVEEGEID
Best Arabidopsis Sequence Match ( AT3G27260.4 )
(BLAST)
001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPNLAN DVEEGEID
Arabidopsis Description
GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.