Factsheet for TraesCS6A01G214000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G323000.1
TraesCS2A01G323200.1
TraesCS2B01G359400.1
TraesCS2B01G359600.1
TraesCS2D01G339700.1
TraesCS2D01G339900.1
TraesCS3A01G413600.1
TraesCS3A01G413700.1
TraesCS3B01G448000.1
TraesCS3B01G448100.1
TraesCS3D01G408000.1
TraesCS3D01G408100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01770.1	TraesCS2A01G323000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT3G48360.1	15316289
AT3G01770.1	TraesCS2A01G323000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2A01G323200.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359400.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2B01G359600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS2D01G339900.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413600.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3A01G413700.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3B01G448100.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408000.1	AT5G63160.1	15316289
AT3G01770.1	TraesCS3D01G408100.1	AT5G63160.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G196600.3	Wheat	nucleus	97.59	98.01
TraesCS6B01G244000.2	Wheat	plastid	97.88	95.97
HORVU6Hr1G054560.16	Barley	nucleus	93.06	91.89
TraesCS3A01G087800.1	Wheat	plastid	75.07	86.89
TraesCS3A01G122200.1	Wheat	nucleus	84.14	83.31
Os02t0601800-03	Rice	nucleus	81.87	80.95
EES07108	Sorghum	nucleus	78.61	78.06
Zm00001d017126_P001	Maize	nucleus	75.78	76.87
VIT_17s0000g01830.t01	Wine grape	nucleus	46.18	43.18
GSMUA_Achr8P01140_001	Banana	nucleus	45.18	42.48
GSMUA_Achr8P08920_001	Banana	nucleus	38.95	42.31
Bra038624.1-P	Field mustard	nucleus	14.45	42.15
VIT_14s0171g00380.t01	Wine grape	nucleus	43.63	41.79
Bra025262.1-P	Field mustard	nucleus	31.59	41.22
KRH07021	Soybean	nucleus	43.34	41.13
KRH63729	Soybean	nucleus	45.04	40.61
KRG94435	Soybean	nucleus	42.49	40.43
GSMUA_Achr10P...	Banana	nucleus	36.4	40.28
Bra039088.1-P	Field mustard	nucleus	36.83	39.94
KRH57199	Soybean	nucleus	41.78	39.92
CDY20057	Canola	nucleus	36.4	39.84
KRH54219	Soybean	nucleus	44.19	39.59
GSMUA_Achr2P20970_001	Banana	nucleus	40.09	39.31
Solyc03g111090.2.1	Tomato	nucleus	43.2	39.05
PGSC0003DMT400052108	Potato	nucleus	39.94	38.68
PGSC0003DMT400039290	Potato	nucleus	42.92	38.55
Solyc02g093880.2.1	Tomato	nucleus	38.95	37.93
GSMUA_Achr3P02660_001	Banana	plasma membrane	34.99	37.77
AT3G01770.1	Thale cress	nucleus	32.86	37.42
CDY13699	Canola	nucleus	24.08	37.2
AT5G14270.2	Thale cress	nucleus	35.55	36.43
KRH07022	Soybean	nucleus	39.8	35.75
TraesCS7A01G312700.2	Wheat	nucleus	37.96	35.73
CDX83673	Canola	nucleus	24.08	34.14
GSMUA_Achr3P02670_001	Banana	nucleus	33.99	34.04
CDX84396	Canola	nucleus	29.04	33.44
AT3G27260.3	Thale cress	nucleus	38.53	33.09
TraesCS7A01G539800.2	Wheat	nucleus, plastid	23.23	29.87
TraesCS2A01G466700.3	Wheat	cytosol, mitochondrion, nucleus, plastid	17.71	26.77
AT5G63320.1	Thale cress	nucleus	39.94	26.58
TraesCS3A01G234100.1	Wheat	cytosol, nucleus, plastid	8.07	26.51
TraesCS3A01G234600.1	Wheat	cytosol, nucleus, plastid	7.93	26.05
TraesCS3A01G234000.1	Wheat	cytosol	8.07	25.91
TraesCS3A01G234500.1	Wheat	cytosol	7.93	25.45
CDY48139	Canola	nucleus	31.02	24.77
TraesCS3A01G140500.1	Wheat	nucleus, plastid	16.57	22.94
CDY16729	Canola	nucleus	33.0	20.4
TraesCS4A01G377900.2	Wheat	cytosol	9.77	19.66
TraesCS7A01G080900.1	Wheat	nucleus	9.77	19.66
Bra035848.1-P	Field mustard	nucleus	33.0	19.56
TraesCS1A01G367300.1	Wheat	cytosol	9.63	19.48

Protein Annotations

Gene3D:1.20.1270.220	Gene3D:1.20.920.10	MapMan:15.5.54	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GTE_bromo	InterPro:IPR001487	InterPro:IPR027353
InterPro:IPR036427	InterPro:IPR038336	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF00439	PFAM:PF17035
PRINTS:PR00503	PFscan:PS50014	PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF231	SMART:SM00297
SUPFAM:SSF47370	EnsemblPlantsGene:TraesCS6A01G214000	EnsemblPlants:TraesCS6A01G214000.1	TIGR:cd05506	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:389954091..389959402

Molecular Weight (calculated)

78362.4 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.764

Length

706 amino acids

Sequence
(BLAST)

001: MTPTVLMEFA PQRQIKRSYD EMAYRGVPRG YAETVGESGS PVRVDSQDSS APKRKCISLN SDGFGVKREI FVPSKMSSSE RRYLRKRFRS ELDSVRDLLK
101: KPEFLAIMPV SRAPAYSSSA APRAKKVKGG SHVLRGAKGR FLPTKPRPET SMVLPEATIL QMCEGILKKL MTQKCSHIFN IPVDAEKLNI PDYNDIIKHP
201: MDLGTIKKKL DSGSYTRPSD FAADVRLTFS NAIAYNPRGH AVHDMAIQLN KMFESRWKTV EKKLASAAMK PHVEVDRADS KRRKTPPVDH RDLSIERVRP
301: TEIMKPKMTF EEKESFGNCL ASLSEEPELL PGHIIDLLQQ CIDNNTDQPG DGEIEIDIHA LSDDILLELK KHVDKYLQER DNQQKKSEPS ENEAVNVPGL
401: PGLSHLSTNP CKGGEPIEED VDICGNASPI LIEKDPQIRT NKCGSPSSSS SDSGSSSSDS DSGSDTESES EKVGSPAKLA KVTKIPEQPA EQEKSDVINP
501: VDANHTAGDV ELREQDNESK AAPEGENAKP DRQVSPDKLL RAALLRSRYA DVIVKARGIL SQGEGGDKQE ELEKLQKEEK ERLLAEGNAA MEARRAEAEA
601: ESKRKRDLER EKARQALQEM ERTVEINDSV HPKDLEMLGT ITTEHIVSSV DETSPEHSQD GMPSFLPGSG SMLEKLGLFM KVDEDEEEDE PCSFPSSKDV
701: EEVEIN

Best Arabidopsis Sequence Match ( AT3G27260.1 )
(BLAST)

001: MVESAAFPGG YYRNTFEAPE ESEGSGSSAQ IDTEVTASEN SSTPARKCIM LNSNDEDPYG VQRQVISLYN MSQSERKDLI YRLKLELEQT KIVLKNAELQ
101: RMNPAAVSST SDRVGFSTGQ KISSRVSNSK KPSDFAVGSG KKVRHQNGTS RGWNRGTSGK FESSKETMTS TPNITLMKQC DTLLRKLWSH PHSWVFQAPV
201: DVVKLNIPDY LTTIKHPMDL GTVKKNLASG VYSSPHEFAA DVRLTFTNAM TYNPPGHDVH IMGDILSKLF EARWKTIKKK LPPCSMQTLP AVTLEPNDER
301: KAAISVPPAK KRKMASPVRE SVPEPVKPLM TEVERHRLGR QLESLLDELP AHIIDFLKKH NSNGGEIAED EIEIDIDVLS DEVLVTLRNL LDEYIQNKEA
401: KQTNVEPCEI ELINGSRPSN SSLQRGNEMA DEYVDGNEPP ISRSSSDSDS GSSEDQSDDA KPMVQGDSSK MPETANSEAQ RDENTRIDDL FVGSQSTGAL
501: EQMDICSQQK LSSDESDGQH EGNILETPAS SEKRYRAALL KNRFADIILK AREKPLPQNG IKGDPERLRK EREELVLQKK KEKARLQAEA EAAEDARRQA
601: EAEAAAEAAA EAKRKRELER EAARQALLKM EKTVEINENS RFLEDLEMLS SSAPEQLPSS AEETSPERPL DALGSFNLRG SNPLEQLGLY MKQDDDEEEP
701: EAPAVPKPDE TSTERPLDAL GSFKLGECNP LEQLGLYMKQ DDGEEEEPEA PVVPKPNETS LERPVDAFGS FNLKGSNPLE QLGLYMKQDD DEEEPEAPAV
801: PNLANDVEEG EID

Arabidopsis Description

GTE8Global transcription factor group E8 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.