CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63160.1	CDY16196	AT1G26830.1	15772280
AT5G63160.1	CDY45004	AT1G26830.1	15772280
AT5G63160.1	CDY46437	AT1G26830.1	15772280
AT5G63160.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30743	Canola	nucleus	94.96	94.96
AT5G63160.1	Thale cress	nucleus	82.12	89.32
CDY70710	Canola	nucleus	34.76	87.9
CDX84392	Canola	nucleus	80.1	87.85
CDY41504	Canola	nucleus	72.8	87.05
CDY48173	Canola	nucleus	62.72	68.59
CDY39576	Canola	nucleus	60.45	65.4
KRH57174	Soybean	cytosol	35.01	62.9
VIT_17s0000g09790.t01	Wine grape	cytosol	54.41	62.25
PGSC0003DMT400069397	Potato	nucleus	51.64	61.56
PGSC0003DMT400039384	Potato	nucleus	51.89	59.71
Solyc06g071820.2.1	Tomato	nucleus	52.14	59.31
Solyc03g111710.2.1	Tomato	nucleus	51.39	59.13
Solyc06g071830.2.1	Tomato	nucleus	48.36	57.66
PGSC0003DMT400069392	Potato	nucleus	50.38	57.31
KRH63672	Soybean	nucleus	47.1	57.19
KRH03892	Soybean	cytosol	49.37	56.65
KRH37914	Soybean	cytosol	12.34	49.0
GSMUA_AchrUn_...	Banana	nucleus	42.07	48.55
GSMUA_Achr11P...	Banana	nucleus	42.82	47.89
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	41.56	46.74
Os01t0908200-01	Rice	cytosol	40.05	45.82
Zm00001d042443_P001	Maize	cytosol	39.55	45.64
GSMUA_Achr6P12110_001	Banana	nucleus	38.79	44.51
GSMUA_Achr9P02050_001	Banana	cytosol	38.04	44.28
EES01931	Sorghum	cytosol	38.54	43.84
TraesCS3D01G408100.1	Wheat	cytosol, plastid	37.78	42.98
TraesCS3B01G448000.1	Wheat	cytosol, plastid	36.78	42.2
TraesCS3B01G448100.1	Wheat	plastid	37.28	42.05
TraesCS3A01G413600.1	Wheat	cytosol, plastid	36.78	41.95
GSMUA_Achr6P12420_001	Banana	nucleus	39.29	41.94
TraesCS3D01G408000.1	Wheat	plastid	37.28	41.93
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	20.65	41.62
TraesCS3A01G413700.1	Wheat	cytosol, plastid	36.52	41.31
TraesCS2A01G323000.1	Wheat	cytosol	35.01	41.0
TraesCS2B01G359600.1	Wheat	cytosol	34.51	40.41
TraesCS2D01G339900.1	Wheat	cytosol	34.26	40.12
TraesCS2B01G359400.1	Wheat	cytosol	33.75	38.73
Zm00001d025707_P001	Maize	cytosol	33.25	38.71
HORVU2Hr1G083410.1	Barley	cytosol	7.56	37.5
TraesCS2A01G323200.1	Wheat	cytosol	32.49	37.28
Os04t0482300-01	Rice	cytosol	32.75	36.62
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	32.75	35.91
CDY29568	Canola	nucleus	34.26	35.88
EES05370	Sorghum	plastid	31.99	35.67
TraesCS2D01G339700.1	Wheat	cytosol	33.75	35.36
CDY50978	Canola	nucleus, plastid	33.25	35.29
CDX72641	Canola	nucleus, plastid	33.75	35.26
Zm00001d017101_P001	Maize	plastid	32.75	35.23
CDX75666	Canola	nucleus	33.0	35.03
CDY36495	Canola	cytosol	33.0	34.47
CDY08721	Canola	cytosol	32.49	33.95
CDY10140	Canola	plastid	29.97	32.43
CDX86561	Canola	nucleus	33.0	31.26
CDY15554	Canola	nucleus	32.24	30.19
HORVU2Hr1G083430.3	Barley	nucleus	12.34	28.0
HORVU2Hr1G083490.1	Barley	extracellular	4.53	20.69
Os02t0596700-00	Rice	plastid	13.35	17.79

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:A0A078I799
UniProt:A0A078I799	InterPro:BTB/POZ_dom	EnsemblPlants:CDY45741	ProteinID:CDY45741	ProteinID:CDY45741.1	GO:GO:0003674
GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00082655001	InterPro:IPR000197	InterPro:IPR000210
InterPro:IPR035898	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933
InterPro:TAZ_dom_sf	UniParc:UPI0004EE547A	InterPro:Znf_TAZ	SEG:seg	:	:

Description

BnaC02g42410DBnaC02g42410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I799]

Coordinates

chrLK032635:+:41560..44121

Molecular Weight (calculated)

45149.5 Da

IEP (calculated)

9.981

GRAVY (calculated)

-0.313

Length

397 amino acids

Sequence
(BLAST)

001: MPEMHPFKTS HTKLTQILCL KPRAVLVTMA ITATQNDAVS LSADKISYDL VETDVDIITS GRRRIPAHSG VLASASPVLT NIIEKPRKSH GGRGSSKRVV
101: KILGVPCDAV SVFVRFLYSP SLTEKEMENY GIHLLALSHV YMVPQLKQRC TKGVGERVTA ENVVDVLQLA RLCDAPDLIL KCMRLIHSKF KTVEQTEGWK
201: FLQEHDPLLE LDILQFIDEA ESRKKRRRRH RREQNLYMKL SEAMECIEHI CTDGCTWVGP SSNLDNNKST SQVKTGPCGA FSTCYGLQLL IRHFTVCKKR
301: VDGKGCLRCK RMIQLLRLHS SICDQSESCR VPLCSRQFKS RGEKDNKMVE EMKWKVLVRR VASAKAMSSL SQSKKKKIEV LFKEEAEDFI RIRKKLF

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.