CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69674
CDX71478
CDX72641
CDX75666
CDX83137
CDX83249
CDX84392
CDX85673
CDX86561
CDX90048
CDX91149
CDX92505
CDX93236
CDX93238
CDX97221
CDY04472
CDY05245
CDY07031
CDY07638
CDY08064
CDY08283
CDY10140
CDY15554
CDY18844
CDY24708
CDY25575
CDY29568
CDY30743
CDY34002
CDY34003
CDY34413
CDY35864
CDY38538
CDY39576
CDY41504
CDY42292
CDY44276
CDY45741
CDY48173
CDY50978
CDY58342
CDY61778
CDY70710

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	CDX90048	AT1G01640.1	15772280
AT1G26830.1	CDX86561	AT1G05690.1	15772280
AT1G26830.1	CDY10140	AT1G05690.1	15772280
AT1G26830.1	CDY15554	AT1G05690.1	15772280
AT1G26830.1	CDY25575	AT1G64280.1	19490895
AT1G26830.1	CDY34413	AT1G64280.1	19490895
AT1G26830.1	CDX71478	AT2G26990.1	12615944
AT1G26830.1	CDX83249	AT2G26990.1	12615944
AT1G26830.1	CDY04472	AT2G26990.1	12615944
AT1G26830.1	CDY38538	AT2G26990.1	12615944
AT1G26830.1	CDX93236	AT2G39760.1	15618422
AT1G26830.1	CDX93238	AT2G39760.1	15618422
AT1G26830.1	CDY07031	AT2G39760.1	15618422
AT1G26830.1	CDY07638	AT2G39760.1	15618422
AT1G26830.1	CDY61778	AT2G39760.1	15618422
AT1G26830.1	CDX93236	AT2G39760.1	15659098
AT1G26830.1	CDX93238	AT2G39760.1	15659098
AT1G26830.1	CDY07031	AT2G39760.1	15659098
AT1G26830.1	CDY07638	AT2G39760.1	15659098
AT1G26830.1	CDY61778	AT2G39760.1	15659098
AT1G26830.1	CDX93236	AT2G39760.1	15772280
AT1G26830.1	CDX93238	AT2G39760.1	15772280
AT1G26830.1	CDY07031	AT2G39760.1	15772280
AT1G26830.1	CDY07638	AT2G39760.1	15772280
AT1G26830.1	CDY61778	AT2G39760.1	15772280
AT1G26830.1	CDY05245	AT3G06190.1	15772280
AT1G26830.1	CDY08064	AT3G06190.1	15772280
AT1G26830.1	CDY18844	AT3G06190.1	15772280
AT1G26830.1	CDY24708	AT3G06190.1	15772280
AT1G26830.1	CDY58342	AT3G06190.1	15772280
AT1G26830.1	CDY39576	AT3G48360.1	15772280
AT1G26830.1	CDY48173	AT3G48360.1	15772280
AT1G26830.1	CDX92505	AT4G07670.1	15749712
AT1G26830.1	CDY35864	AT4G07670.1	15749712
AT1G26830.1	CDY42292	AT4G07670.1	15749712
AT1G26830.1	CDY44276	AT4G07670.1	15749712
AT1G26830.1	CDX83137	AT4G08455.1	15749712
AT1G26830.1	CDY34002	AT4G08455.1	15749712
AT1G26830.1	CDY34003	AT4G08455.1	15749712
AT1G26830.1	CDX72641	AT4G37610.1	15772280
AT1G26830.1	CDX75666	AT4G37610.1	15772280
AT1G26830.1	CDY29568	AT4G37610.1	15772280
AT1G26830.1	CDY50978	AT4G37610.1	15772280
AT1G26830.1	CDX69674	AT5G13060.1	15659098
AT1G26830.1	CDX85673	AT5G13060.1	15659098
AT1G26830.1	CDX91149	AT5G13060.1	15659098
AT1G26830.1	CDX97221	AT5G13060.1	15659098
AT1G26830.1	CDY08283	AT5G48510.1	15772280
AT1G26830.1	CDX84392	AT5G63160.1	15772280
AT1G26830.1	CDY30743	AT5G63160.1	15772280
AT1G26830.1	CDY41504	AT5G63160.1	15772280
AT1G26830.1	CDY45741	AT5G63160.1	15772280
AT1G26830.1	CDY70710	AT5G63160.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46437	Canola	cytosol	99.59	99.59
CDY16196	Canola	cytosol	97.4	97.4
CDY50732	Canola	cytosol	96.99	96.99
AT1G26830.1	Thale cress	cytosol	95.49	95.49
PGSC0003DMT400016765	Potato	cytosol	82.92	82.7
Solyc01g010820.2.1	Tomato	cytosol	82.65	82.43
KRH45896	Soybean	cytosol	82.1	82.1
KRG99095	Soybean	cytosol	81.97	81.97
VIT_01s0026g02230.t01	Wine grape	cytosol	81.83	81.72
GSMUA_AchrUn_...	Banana	cytosol	76.23	78.81
GSMUA_Achr8P16990_001	Banana	cytosol	76.23	78.81
EES05529	Sorghum	cytosol	79.1	78.67
GSMUA_Achr7P18000_001	Banana	cytosol	75.96	78.53
Zm00001d018043_P001	Maize	cytosol	78.42	77.99
TraesCS6D01G285800.1	Wheat	cytosol	78.01	77.58
TraesCS6A01G306600.1	Wheat	cytosol	77.87	77.45
TraesCS6B01G335200.1	Wheat	cytosol	77.87	77.45
Os02t0746000-01	Rice	cytosol	77.6	77.17
HORVU6Hr1G075720.2	Barley	cytosol	77.19	75.74
GSMUA_AchrUn_...	Banana	cytosol	60.11	73.95
KRH70713	Soybean	cytosol	72.68	73.18
CDY33461	Canola	cytosol	40.71	39.16
CDX77644	Canola	cytosol	40.85	38.98
CDY43957	Canola	cytosol	40.71	38.4
CDY35152	Canola	plastid	41.12	38.3
CDY03235	Canola	plastid	41.12	38.1
CDX87735	Canola	cytosol	40.57	38.08
CDY51862	Canola	cytosol	13.25	33.56
CDY72590	Canola	cytosol	4.23	32.98
CDX90932	Canola	cytosol	33.06	32.79
CDY21896	Canola	cytosol	33.06	32.79
CDY22060	Canola	cytosol	33.06	32.79
CDY18013	Canola	cytosol	32.92	32.66
CDY32488	Canola	cytosol	32.92	32.66
CDY51951	Canola	cytosol	32.1	31.89
CDX93643	Canola	cytosol	21.99	31.88
CDX89926	Canola	cytosol	31.28	31.85
CDX89925	Canola	cytosol	31.56	31.69
CDY11663	Canola	cytosol	28.96	30.16
CDX67439	Canola	cytosol	28.55	29.73
CDY51863	Canola	cytosol	14.21	24.07
CDX91291	Canola	nucleus	3.83	22.95
CDY22061	Canola	mitochondrion	7.79	22.35
CDY21897	Canola	mitochondrion	7.79	22.35
CDY37452	Canola	cytosol	3.01	16.79
CDY18137	Canola	cytosol	31.28	15.61

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	GO:A0A078I6G7	UniProt:A0A078I6G7
EnsemblPlants:CDY45004	ProteinID:CDY45004	ProteinID:CDY45004.1	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625
EnsemblPlantsGene:GSBRNA2T00081205001	InterPro:IPR016158	InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniPathway:UPA00143	UniParc:UPI0004EC3720	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

BnaCnng12340DBnaCnng12340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6G7]

Coordinates

chrLK032608:+:192479..195310

Molecular Weight (calculated)

85054.4 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.551

Length

732 amino acids

Sequence
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTGHL KEKARLIEAA QGGAFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK PHVHPMGLSL WRDNVVHSPK IHTRLLNTLL DLVYKERTGE VIDRGLVRNV TKMFMDLGES VYQDDFEKPF
201: LEASSEFYKV ESQEFIESCD CGDYLKKAEK RLTEEIDRVG HYLDAKSEDK ITSVVEREMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YSLFRRVTNG
301: LATVRDVMTL HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIISTA FGNDKTFQNA SNSSFEYFIN LNTRSPEFIS LFVDDKLRKG LKGIADVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AEKSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LTVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAVF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA PELKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE DDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DNTDRKLYRY LA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.