CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	CDY16196	AT1G26830.1	15772280
AT3G06190.1	CDY45004	AT1G26830.1	15772280
AT3G06190.1	CDY46437	AT1G26830.1	15772280
AT3G06190.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24708	Canola	cytosol	95.45	93.8
CDY58342	Canola	cytosol	91.92	90.32
CDY08064	Canola	cytosol	91.67	89.19
AT3G06190.1	Thale cress	cytosol	88.38	86.21
CDY18844	Canola	cytosol	84.34	77.86
CDY66705	Canola	cytosol	77.53	76.18
CDX70860	Canola	cytosol	78.54	70.68
VIT_05s0020g02520.t01	Wine grape	plastid	72.73	70.59
CDX92567	Canola	cytosol	77.53	69.93
CDY13941	Canola	cytosol	76.52	69.02
CDY02591	Canola	cytosol	69.19	68.5
HORVU2Hr1G023850.1	Barley	cytosol, plastid	66.16	66.84
GSMUA_Achr6P16160_001	Banana	plastid	69.7	66.19
Solyc01g080250.2.1	Tomato	plastid	67.93	66.09
PGSC0003DMT400011115	Potato	plastid	67.42	65.6
GSMUA_Achr6P23740_001	Banana	plastid	68.69	65.38
Zm00001d022366_P001	Maize	plastid	67.68	63.51
Os07t0655300-01	Rice	plastid	69.19	63.13
EER99824	Sorghum	plastid	67.68	62.91
Zm00001d007068_P001	Maize	plastid	67.42	62.68
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	67.17	62.59
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	67.17	62.59
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	67.17	62.59
CDX93238	Canola	cytosol	54.55	54.55
CDY07031	Canola	cytosol	54.04	53.63
CDY07638	Canola	cytosol	53.79	53.25
CDY61778	Canola	cytosol	54.29	50.95
CDX70957	Canola	plastid	51.77	50.0
CDX88828	Canola	plastid	51.77	50.0
CDY29955	Canola	plastid	55.81	49.22
CDY09093	Canola	cytosol, plastid	44.7	48.23
CDY71585	Canola	cytosol	20.96	41.09
CDY67137	Canola	endoplasmic reticulum	35.1	39.04
CDY16586	Canola	cytosol	16.92	38.51
CDX93236	Canola	cytosol	36.87	35.78

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlants:CDY05245	ProteinID:CDY05245	ProteinID:CDY05245.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00120063001	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0004EEB56E	:

Description

BnaC05g45580D

Coordinates

chrLK031960:+:536668..539037

Molecular Weight (calculated)

44374.1 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.132

Length

396 amino acids

Sequence
(BLAST)

001: MDAIRVCAEV PGSSKSTTET INGSHEFKIS GYSLAKGMGI GKYVASDTFT VGGYSWAVYF YPDGKSPEDN SLYVSLFIAL ASEGADVRAL FELTLVDQSG
101: NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRTLLE SSDYLKDNCL LVRCCVGVVK SSTEGPRSYN IPVPVSDLGY QFGKLLESGK GADVTFHVDG
201: ERFLAHRVVL AARSPVFRAQ LFGPLRNKNT KRINIEDIEA PIFKMFLHFI YWDELPDMEY LMGTDLKWAS TLVAQHLLAA ADCYALERLR TICESKLCEV
301: ISINTVATTL ALAEQHHCFQ LKAACLEFIA LPANLKAVME TDGFDYLKES CPGLLSELLE YVARLSEHSL ASAWNRKEFY PDGCDVNGRR VKQRLH

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.