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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71585 Canola cytosol 89.66 77.23
CDX70957 Canola plastid 84.48 35.85
CDX88828 Canola plastid 83.91 35.61
AT5G21010.1 Thale cress cytosol 81.03 34.39
CDY67137 Canola endoplasmic reticulum 54.6 26.69
CDY09093 Canola cytosol, plastid 54.02 25.61
HORVU5Hr1G104190.1 Barley cytosol 57.47 24.75
PGSC0003DMT400070468 Potato cytosol 56.9 24.26
KRH73429 Soybean cytosol, plastid 55.17 24.24
VIT_06s0009g01030.t01 Wine grape cytosol 58.62 24.11
Solyc11g072070.1.1 Tomato cytosol 56.32 24.02
KRH14738 Soybean cytosol 54.6 23.99
PGSC0003DMT400058456 Potato cytosol 55.75 23.95
GSMUA_Achr7P27230_001 Banana cytosol 54.02 23.92
Solyc01g009060.2.1 Tomato cytosol 55.17 23.7
Zm00001d034400_P003 Maize cytosol 57.47 23.36
Zm00001d013094_P001 Maize cytosol 57.47 23.36
EER90755 Sorghum cytosol 56.9 23.08
TraesCS5A01G429400.2 Wheat cytosol 57.47 22.88
TraesCS2A01G237800.1 Wheat cytosol 55.75 22.77
TraesCS2B01G262200.1 Wheat cytosol 55.75 22.77
TraesCS2D01G246900.1 Wheat cytosol, plastid 55.75 22.77
TraesCS5B01G431400.2 Wheat cytosol 56.9 22.65
GSMUA_Achr4P14800_001 Banana cytosol 51.15 22.65
GSMUA_Achr5P08970_001 Banana cytosol 52.3 22.64
Os07t0167200-01 Rice cytosol 54.02 22.17
TraesCS5D01G437400.1 Wheat cytosol 57.47 21.69
KXG34465 Sorghum cytosol 54.6 21.54
Zm00001d018887_P002 Maize cytosol 52.87 21.3
CDY29955 Canola plastid 54.02 20.94
HORVU2Hr1G055140.1 Barley cytosol 55.17 20.91
CDY58342 Canola cytosol 40.8 17.62
CDY02591 Canola cytosol 40.23 17.5
CDY08064 Canola cytosol 40.8 17.44
CDY05245 Canola cytosol 38.51 16.92
CDY66705 Canola cytosol 39.08 16.87
CDY18844 Canola cytosol 41.38 16.78
CDY24708 Canola cytosol 38.51 16.63
CDX92567 Canola cytosol 40.23 15.95
CDX70860 Canola cytosol 39.66 15.68
CDX93238 Canola cytosol 35.63 15.66
CDY07031 Canola cytosol 35.63 15.54
CDY13941 Canola cytosol 39.08 15.49
CDY07638 Canola cytosol 34.48 15.0
CDY61778 Canola cytosol 34.48 14.22
CDX93236 Canola cytosol 32.76 13.97
KXG25976 Sorghum cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDY16586EnsemblPlantsGene:GSBRNA2T00094392001Gene3D:1.25.40.420Gene3D:3.30.710.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:BPM_CInterPro:BTB/POZ_domInterPro:IPR000210InterPro:SKP1/BTB/POZ_sfPANTHER:PTHR24411
PANTHER:PTHR24411:SF53PFAM:PF00651PFscan:PS50097ProteinID:CDY16586ProteinID:CDY16586.1SEG:seg
SMART:SM00225SUPFAM:SSF54695UniParc:UPI0004EDEC25UniProt:A0A078FUD0MapMan:35.1:
Description
BnaC09g36870DBnaC09g36870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUD0]
Coordinates
chrLK032065:+:445985..446940
Molecular Weight (calculated)
19011.5 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.279
Length
174 amino acids
Sequence
(BLAST)
001: MEGSDVTFNI AGDKFQSHKL VLAARSPFFK SKFSNELEAN STEVTINDLE PKLRTSIYLN RLRLLCESHI CNGVSVKSVA KILALADRYK ATELKSVCLK
101: FTAENLAAVL ETDGYQQQKD ECLSLQSELL KAVAGYEESS NSIAKSLSVW AQLSEGGGCG GGDTSSRHVR QRTT
Best Arabidopsis Sequence Match ( AT3G43700.1 )
(BLAST)
001: MSKLMTRTSG SSSPNTIPDQ IESPTSSRSV TQTTNGSHQF VIQGYSLAKG IGVGKHIASD NFSVGGYQWT IFVYPDGKNP EDNSSYVSVF IVLASECTEV
101: RALFELSLVD QSGKGKHKVH SHFNRSLDGG PYTLKYRGSM WGYKRFFRRS LLETSDYLKD DCLKINCTVG VVVSEMHCPR LLSIHVPDSE LGSHFGKLLD
201: TLQGSDVTFD VAGEKFQAHK LVLAARSQFF RSMFYNTLAE NNSDVVISDL EPKVFKALLH FMYKDSLPGD VEPLTAHSFD LLRPSEIDDT LIVKLLAAAE
301: MYNLSRLRLL CESHICKGIS ISSVSKILAL SDKYNASELK SVSLKFTAEN LAAVLQTKAY EDLKDDCPNL QSELLKAVAG YDDTSSSGGG KSQSVWAQLS
401: NGGETSSRRV RQRTT
Arabidopsis Description
BPM6BTB/POZ and MATH domain-containing protein 6 [Source:UniProtKB/Swiss-Prot;Acc:A1L4W5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.