Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G21010.1 | CDX93236 | AT2G39760.1 | 15618422 |
AT5G21010.1 | CDX93238 | AT2G39760.1 | 15618422 |
AT5G21010.1 | CDY07031 | AT2G39760.1 | 15618422 |
AT5G21010.1 | CDY07638 | AT2G39760.1 | 15618422 |
AT5G21010.1 | CDY61778 | AT2G39760.1 | 15618422 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY71585 | Canola | cytosol | 89.66 | 77.23 |
CDX70957 | Canola | plastid | 84.48 | 35.85 |
CDX88828 | Canola | plastid | 83.91 | 35.61 |
AT5G21010.1 | Thale cress | cytosol | 81.03 | 34.39 |
CDY67137 | Canola | endoplasmic reticulum | 54.6 | 26.69 |
CDY09093 | Canola | cytosol, plastid | 54.02 | 25.61 |
HORVU5Hr1G104190.1 | Barley | cytosol | 57.47 | 24.75 |
PGSC0003DMT400070468 | Potato | cytosol | 56.9 | 24.26 |
KRH73429 | Soybean | cytosol, plastid | 55.17 | 24.24 |
VIT_06s0009g01030.t01 | Wine grape | cytosol | 58.62 | 24.11 |
Solyc11g072070.1.1 | Tomato | cytosol | 56.32 | 24.02 |
KRH14738 | Soybean | cytosol | 54.6 | 23.99 |
PGSC0003DMT400058456 | Potato | cytosol | 55.75 | 23.95 |
GSMUA_Achr7P27230_001 | Banana | cytosol | 54.02 | 23.92 |
Solyc01g009060.2.1 | Tomato | cytosol | 55.17 | 23.7 |
Zm00001d034400_P003 | Maize | cytosol | 57.47 | 23.36 |
Zm00001d013094_P001 | Maize | cytosol | 57.47 | 23.36 |
EER90755 | Sorghum | cytosol | 56.9 | 23.08 |
TraesCS5A01G429400.2 | Wheat | cytosol | 57.47 | 22.88 |
TraesCS2A01G237800.1 | Wheat | cytosol | 55.75 | 22.77 |
TraesCS2B01G262200.1 | Wheat | cytosol | 55.75 | 22.77 |
TraesCS2D01G246900.1 | Wheat | cytosol, plastid | 55.75 | 22.77 |
TraesCS5B01G431400.2 | Wheat | cytosol | 56.9 | 22.65 |
GSMUA_Achr4P14800_001 | Banana | cytosol | 51.15 | 22.65 |
GSMUA_Achr5P08970_001 | Banana | cytosol | 52.3 | 22.64 |
Os07t0167200-01 | Rice | cytosol | 54.02 | 22.17 |
TraesCS5D01G437400.1 | Wheat | cytosol | 57.47 | 21.69 |
KXG34465 | Sorghum | cytosol | 54.6 | 21.54 |
Zm00001d018887_P002 | Maize | cytosol | 52.87 | 21.3 |
CDY29955 | Canola | plastid | 54.02 | 20.94 |
HORVU2Hr1G055140.1 | Barley | cytosol | 55.17 | 20.91 |
CDY58342 | Canola | cytosol | 40.8 | 17.62 |
CDY02591 | Canola | cytosol | 40.23 | 17.5 |
CDY08064 | Canola | cytosol | 40.8 | 17.44 |
CDY05245 | Canola | cytosol | 38.51 | 16.92 |
CDY66705 | Canola | cytosol | 39.08 | 16.87 |
CDY18844 | Canola | cytosol | 41.38 | 16.78 |
CDY24708 | Canola | cytosol | 38.51 | 16.63 |
CDX92567 | Canola | cytosol | 40.23 | 15.95 |
CDX70860 | Canola | cytosol | 39.66 | 15.68 |
CDX93238 | Canola | cytosol | 35.63 | 15.66 |
CDY07031 | Canola | cytosol | 35.63 | 15.54 |
CDY13941 | Canola | cytosol | 39.08 | 15.49 |
CDY07638 | Canola | cytosol | 34.48 | 15.0 |
CDY61778 | Canola | cytosol | 34.48 | 14.22 |
CDX93236 | Canola | cytosol | 32.76 | 13.97 |
KXG25976 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:CDY16586 | EnsemblPlantsGene:GSBRNA2T00094392001 | Gene3D:1.25.40.420 | Gene3D:3.30.710.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:BPM_C | InterPro:BTB/POZ_dom | InterPro:IPR000210 | InterPro:SKP1/BTB/POZ_sf | PANTHER:PTHR24411 |
PANTHER:PTHR24411:SF53 | PFAM:PF00651 | PFscan:PS50097 | ProteinID:CDY16586 | ProteinID:CDY16586.1 | SEG:seg |
SMART:SM00225 | SUPFAM:SSF54695 | UniParc:UPI0004EDEC25 | UniProt:A0A078FUD0 | MapMan:35.1 | : |
Description
BnaC09g36870DBnaC09g36870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUD0]
Coordinates
chrLK032065:+:445985..446940
Molecular Weight (calculated)
19011.5 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.279
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSDVTFNI AGDKFQSHKL VLAARSPFFK SKFSNELEAN STEVTINDLE PKLRTSIYLN RLRLLCESHI CNGVSVKSVA KILALADRYK ATELKSVCLK
101: FTAENLAAVL ETDGYQQQKD ECLSLQSELL KAVAGYEESS NSIAKSLSVW AQLSEGGGCG GGDTSSRHVR QRTT
101: FTAENLAAVL ETDGYQQQKD ECLSLQSELL KAVAGYEESS NSIAKSLSVW AQLSEGGGCG GGDTSSRHVR QRTT
001: MSKLMTRTSG SSSPNTIPDQ IESPTSSRSV TQTTNGSHQF VIQGYSLAKG IGVGKHIASD NFSVGGYQWT IFVYPDGKNP EDNSSYVSVF IVLASECTEV
101: RALFELSLVD QSGKGKHKVH SHFNRSLDGG PYTLKYRGSM WGYKRFFRRS LLETSDYLKD DCLKINCTVG VVVSEMHCPR LLSIHVPDSE LGSHFGKLLD
201: TLQGSDVTFD VAGEKFQAHK LVLAARSQFF RSMFYNTLAE NNSDVVISDL EPKVFKALLH FMYKDSLPGD VEPLTAHSFD LLRPSEIDDT LIVKLLAAAE
301: MYNLSRLRLL CESHICKGIS ISSVSKILAL SDKYNASELK SVSLKFTAEN LAAVLQTKAY EDLKDDCPNL QSELLKAVAG YDDTSSSGGG KSQSVWAQLS
401: NGGETSSRRV RQRTT
101: RALFELSLVD QSGKGKHKVH SHFNRSLDGG PYTLKYRGSM WGYKRFFRRS LLETSDYLKD DCLKINCTVG VVVSEMHCPR LLSIHVPDSE LGSHFGKLLD
201: TLQGSDVTFD VAGEKFQAHK LVLAARSQFF RSMFYNTLAE NNSDVVISDL EPKVFKALLH FMYKDSLPGD VEPLTAHSFD LLRPSEIDDT LIVKLLAAAE
301: MYNLSRLRLL CESHICKGIS ISSVSKILAL SDKYNASELK SVSLKFTAEN LAAVLQTKAY EDLKDDCPNL QSELLKAVAG YDDTSSSGGG KSQSVWAQLS
401: NGGETSSRRV RQRTT
Arabidopsis Description
BPM6BTB/POZ and MATH domain-containing protein 6 [Source:UniProtKB/Swiss-Prot;Acc:A1L4W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.