CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93236
CDX93238
CDY07031
CDY07638
CDY61778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G21010.1	CDX93236	AT2G39760.1	15618422
AT5G21010.1	CDX93238	AT2G39760.1	15618422
AT5G21010.1	CDY07031	AT2G39760.1	15618422
AT5G21010.1	CDY07638	AT2G39760.1	15618422
AT5G21010.1	CDY61778	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88828	Canola	plastid	97.56	97.56
AT5G21010.1	Thale cress	cytosol	88.54	88.54
CDY71585	Canola	cytosol	42.44	86.14
CDY16586	Canola	cytosol	35.85	84.48
CDY09093	Canola	cytosol, plastid	74.39	83.11
KXG25976	Sorghum	cytosol	23.41	79.34
KRH73429	Soybean	cytosol, plastid	65.61	67.93
KRH14738	Soybean	cytosol	65.12	67.42
GSMUA_Achr7P27230_001	Banana	cytosol	64.39	67.18
HORVU5Hr1G104190.1	Barley	cytosol	66.1	67.08
VIT_06s0009g01030.t01	Wine grape	cytosol	68.78	66.67
PGSC0003DMT400070468	Potato	cytosol	65.37	65.69
PGSC0003DMT400058456	Potato	cytosol	64.88	65.68
Solyc11g072070.1.1	Tomato	cytosol	64.88	65.2
GSMUA_Achr5P08970_001	Banana	cytosol	63.9	65.17
GSMUA_Achr4P14800_001	Banana	cytosol	62.44	65.14
TraesCS2D01G246900.1	Wheat	cytosol, plastid	67.32	64.79
Solyc01g009060.2.1	Tomato	cytosol	63.9	64.69
TraesCS2B01G262200.1	Wheat	cytosol	67.07	64.55
TraesCS2A01G237800.1	Wheat	cytosol	66.83	64.32
Os07t0167200-01	Rice	cytosol	66.34	64.15
Zm00001d034400_P003	Maize	cytosol	66.34	63.55
Zm00001d013094_P001	Maize	cytosol	66.1	63.32
TraesCS5A01G429400.2	Wheat	cytosol	66.59	62.47
EER90755	Sorghum	cytosol	65.37	62.47
TraesCS5B01G431400.2	Wheat	cytosol	65.85	61.78
KXG34465	Sorghum	cytosol	65.12	60.54
Zm00001d018887_P002	Maize	cytosol	63.66	60.42
HORVU2Hr1G055140.1	Barley	cytosol	66.59	59.48
CDY29955	Canola	plastid	64.15	58.57
TraesCS5D01G437400.1	Wheat	cytosol	65.85	58.57
CDY58342	Canola	cytosol	51.95	52.85
CDY08064	Canola	cytosol	51.95	52.33
CDY66705	Canola	cytosol	50.98	51.86
CDY05245	Canola	cytosol	50.0	51.77
CDY24708	Canola	cytosol	50.73	51.61
CDX93238	Canola	cytosol	48.54	50.25
CDY07031	Canola	cytosol	48.78	50.13
CDY67137	Canola	endoplasmic reticulum	42.93	49.44
CDY07638	Canola	cytosol	47.8	49.0
CDY18844	Canola	cytosol	50.0	47.79
CDY61778	Canola	cytosol	48.54	47.16
CDX70860	Canola	cytosol	50.24	46.82
CDX92567	Canola	cytosol	50.0	46.7
CDY02591	Canola	cytosol	44.39	45.5
CDY13941	Canola	cytosol	48.54	45.33
CDX93236	Canola	cytosol	31.95	32.11

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlants:CDX70957	ProteinID:CDX70957	ProteinID:CDX70957.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00140875001	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFAM:PF00917	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0004EE288C

Description

BnaC03g10410D

Coordinates

chrLK031791:+:2934507..2937294

Molecular Weight (calculated)

45387.8 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.287

Length

410 amino acids

Sequence
(BLAST)

001: MSGSQIPRSN PDRVSSPTSS KSVTQTVNGS HQFVIQGYRL AKGMGVGKHI ASDNFSVGGY QWGIFFYPDG KNPEDNSAYV SVFVALASEG TEVRALFELA
101: LVDQSGKGNH KVHSHFERSL DSGPYTLKYK GSMWGYKRFY RRTQLETSDF LKDDCLIINC TVGVVVSEVQ CPRLHSIRVP DSELGSHFGV LLDSMEGSDV
201: TFDIAGEKFQ AHKLVLAARS PFFKSKFFNE PEANNREVPI NNLEPKVFKA LLQFMYKDSL PEDVEPVTAH TFDLLKLPDI YETLIVKLLA AADRYNLNRL
301: RLLCESHICK GVSVKSVAKI LALADRYKAT ELKDVCLKFT AENLAAVLET DAYQQLKDEC LSLQSELLKA VAGYEEASNS TGGAKSQSVW AQLSDGGGDT
401: SSRHVRQRTT

Best Arabidopsis Sequence Match ( AT5G21010.1 )
(BLAST)

001: MSESVIQGSN PDRVLSPTSS KSVTQTVNGS HQFVIQGYSL AKGMGIGKHI ASDNFSVGGY QWGIFFYPDG KNPEDNSSYV SVFIALASEG TEVRALFELA
101: LVDQSGKGKH KVHSHFERSL DGGPYTLKYR GSMWGYKRFF RRSILETSDY LKDDCLIINC TVGVVVSEIL CPQLHSVHVP DSELGSHFGV LLDSMEGSDI
201: TFNIAGEKFL AHKLVLAARS PFFKSKFFSE FEANNTEVTI NDLEPKVFKA LLQFMYKDSL PEDVEPATAH TFERLKLSEI YETLIVKVLA AADKYDLIRL
301: RLLCESHICK GVSVKSVAKI LALADRYNAK ELKGVCLKFT AENLAAVLET DAYQQMKDEC VTLQSELLKA VAGHEEGSNS TGGAKSQSVW AQLSDGGGDT
401: TSRHVRQRTT

Arabidopsis Description

BPM5BTB/POZ and MATH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q1EBV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.