Factsheet for GSMUA_Achr4P14800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P10650_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P16990_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	GSMUA_Achr7P18000_001	AT1G26830.1	15772280
AT3G43700.1	GSMUA_Achr8P16990_001	AT1G26830.1	15772280
AT3G43700.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT3G43700.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT3G43700.1	GSMUA_Achr10P...	AT2G39760.1	15618422
AT3G43700.1	GSMUA_Achr7P10650_001	AT2G39760.1	15618422
AT5G21010.1	GSMUA_Achr10P...	AT2G39760.1	15618422
AT5G21010.1	GSMUA_Achr7P10650_001	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25976	Sorghum	cytosol	27.99	90.91
GSMUA_Achr7P27230_001	Banana	cytosol	83.46	83.46
GSMUA_Achr5P08970_001	Banana	cytosol	78.63	76.87
KRH73429	Soybean	cytosol, plastid	71.76	71.21
KRH14738	Soybean	cytosol	71.25	70.71
Os07t0167200-01	Rice	cytosol	76.08	70.52
HORVU5Hr1G104190.1	Barley	cytosol	72.26	70.3
VIT_06s0009g01030.t01	Wine grape	cytosol	75.06	69.74
PGSC0003DMT400058456	Potato	cytosol	71.76	69.63
Solyc01g009060.2.1	Tomato	cytosol	71.76	69.63
TraesCS2A01G237800.1	Wheat	cytosol	75.32	69.48
Zm00001d013094_P001	Maize	cytosol	75.57	69.39
TraesCS2D01G246900.1	Wheat	cytosol, plastid	74.81	69.01
TraesCS2B01G262200.1	Wheat	cytosol	74.3	68.54
Zm00001d034400_P003	Maize	cytosol	74.3	68.22
Solyc11g072070.1.1	Tomato	cytosol	70.74	68.14
EER90755	Sorghum	cytosol	74.3	68.07
VIT_08s0056g01670.t01	Wine grape	plastid	74.55	67.98
PGSC0003DMT400070468	Potato	cytosol	70.48	67.89
Zm00001d018887_P002	Maize	cytosol	74.55	67.82
KXG34465	Sorghum	cytosol	74.3	66.21
TraesCS5A01G429400.2	Wheat	cytosol	72.26	64.99
HORVU2Hr1G055140.1	Barley	cytosol	75.83	64.92
TraesCS5B01G431400.2	Wheat	cytosol	71.5	64.3
AT5G21010.1	Thale cress	cytosol	66.16	63.41
KRG94896	Soybean	mitochondrion	69.21	62.96
KRH06640	Soybean	mitochondrion, plastid	68.96	62.44
CDX88828	Canola	plastid	65.14	62.44
CDX70957	Canola	plastid	65.14	62.44
Bra006591.1-P	Field mustard	plastid	65.14	62.44
CDY09093	Canola	cytosol, plastid	58.02	62.13
TraesCS5D01G437400.1	Wheat	cytosol	72.01	61.39
AT3G43700.1	Thale cress	plastid	64.38	60.96
Bra020142.1-P	Field mustard	plastid	64.38	60.96
Bra036437.1-P	Field mustard	plastid	68.96	60.76
CDY29955	Canola	plastid	69.21	60.58
KRG88614	Soybean	mitochondrion	47.33	59.62
KRG94069	Soybean	cytosol	53.44	58.82
KRG88616	Soybean	cytosol	34.86	58.55
KRG94057	Soybean	mitochondrion	27.23	58.47
KRG94050	Soybean	mitochondrion	56.23	58.47
KRG94056	Soybean	cytosol	11.7	58.23
KRG88615	Soybean	mitochondrion	55.98	58.2
AT3G03740.1	Thale cress	cytosol	68.7	58.06
KRG94047	Soybean	cytosol, mitochondrion, plastid	42.75	57.73
KRG94064	Soybean	mitochondrion	54.96	57.14
KRG94052	Soybean	cytosol	26.72	56.15
KRG94053	Soybean	cytosol	26.72	56.15
KRH06645	Soybean	cytosol	56.49	56.06
CDY71585	Canola	cytosol	27.99	54.46
KRG94058	Soybean	mitochondrion	51.4	53.72
GSMUA_Achr6P23740_001	Banana	plastid	56.74	53.61
GSMUA_Achr7P10650_001	Banana	cytosol	54.96	53.33
GSMUA_Achr6P16160_001	Banana	plastid	56.49	53.24
CDY16586	Canola	cytosol	22.65	51.15
CDY67137	Canola	endoplasmic reticulum	45.55	50.28
KRH06646	Soybean	cytosol	36.9	47.54
GSMUA_Achr10P...	Banana	cytosol	22.39	46.56

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G14800_001	EnsemblPlants:GSMUA_Achr4P14800_001	EnsemblPlants:GSMUA_Achr4T14800_001
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:M0SNZ5	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFAM:PF00917	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0002960E46

Description

Putative Speckle-type POZ protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14800_001]

Coordinates

chr4:+:11134500..11138598

Molecular Weight (calculated)

43538.5 Da

IEP (calculated)

5.875

GRAVY (calculated)

-0.221

Length

393 amino acids

Sequence
(BLAST)

001: MTASPTSSRS VTETVNGSHK FVIQGYSLAK GMGVGKHIAS DTFTIGGYQW AIYFYPDGKN VEDNSTYVSV FIALASDGTD VRALFELTLV DQSGKGKHKI
101: HSHFDRSLES GPYTLKYRGS MWGYKRFFRR SALETSDYLK DDCLKINCTV GVVVSVMDSP GLHSVHVPES DIGMHFGSLL DKQEGSDVVF DVSGEKIHAH
201: KLVLAARSPI FHSLFFDGLD DERNEIAVTD MVPKVFKAML HFIYRDTLLE DDILVTSYLP ESSVSDTLVA KLLAAADKYC LERLRLLCEA HLCREISVNS
301: VASTLALADQ YHAMELKASC LKFAAENLAA VMRSSGFEQL KDNSPALQSE LLTTIAGCDE EYKKSRSDWG QLSDGEDSSG RRIRPRTDTD TNY

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.