Factsheet for GSMUA_Achr6P23740_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P18000_001
GSMUA_Achr8P16990_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	GSMUA_Achr7P18000_001	AT1G26830.1	15772280
AT3G06190.1	GSMUA_Achr8P16990_001	AT1G26830.1	15772280
AT3G06190.1	GSMUA_AchrUn_...	AT1G26830.1	15772280
AT3G06190.1	GSMUA_AchrUn_...	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P16160_001	Banana	plastid	87.26	87.05
VIT_07s0104g00570.t01	Wine grape	cytosol	76.44	79.1
HORVU2Hr1G023850.1	Barley	cytosol, plastid	72.6	77.04
VIT_05s0020g02520.t01	Wine grape	plastid	75.0	76.47
KRG95474	Soybean	plastid	74.52	75.61
KRH31976	Soybean	plastid	74.28	74.82
KRH71465	Soybean	plastid	74.04	74.76
Zm00001d022366_P001	Maize	plastid	75.48	74.41
Zm00001d007068_P001	Maize	plastid	75.96	74.18
KRH67156	Soybean	plastid	73.08	74.15
Os07t0655300-01	Rice	plastid	76.92	73.73
EER99824	Sorghum	plastid	75.48	73.71
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	75.0	73.41
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	75.0	73.41
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	74.76	73.18
Solyc09g072980.2.1	Tomato	cytosol	72.36	73.06
PGSC0003DMT400009802	Potato	plastid	71.15	72.55
CDY58342	Canola	cytosol	67.55	69.73
Bra001186.1-P	Field mustard	cytosol	67.55	69.73
AT3G06190.1	Thale cress	cytosol	68.03	69.7
CDY66705	Canola	cytosol	67.31	69.48
Bra040233.1-P	Field mustard	cytosol	64.66	69.15
CDY08064	Canola	cytosol	67.55	69.04
Bra006489.1-P	Field mustard	cytosol	66.59	68.73
CDY05245	Canola	cytosol	65.38	68.69
CDY24708	Canola	cytosol	66.35	68.49
Bra020764.1-P	Field mustard	cytosol	62.98	68.05
Bra002200.1-P	Field mustard	cytosol	65.38	68.0
Solyc01g080250.2.1	Tomato	plastid	66.35	67.81
PGSC0003DMT400011115	Potato	plastid	65.62	67.08
AT5G19000.2	Thale cress	plastid	69.23	65.16
CDX70860	Canola	cytosol	66.59	62.95
CDY18844	Canola	cytosol	64.42	62.47
CDY13941	Canola	cytosol	65.62	62.19
CDX92567	Canola	cytosol	65.62	62.19
CDY02591	Canola	cytosol	58.41	60.75
GSMUA_Achr7P27230_001	Banana	cytosol	56.49	59.8
GSMUA_Achr7P10650_001	Banana	cytosol	56.97	58.52
GSMUA_Achr5P08970_001	Banana	cytosol	55.53	57.46
GSMUA_Achr4P14800_001	Banana	cytosol	53.61	56.74
GSMUA_Achr10P...	Banana	cytosol	24.04	52.91

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G23740_001	EnsemblPlants:GSMUA_Achr6P23740_001	EnsemblPlants:GSMUA_Achr6T23740_001
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:M0T9M2	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI00029547E4	SEG:seg

Description

Putative Protein roadkill [Source:GMGC_GENE;Acc:GSMUA_Achr6G23740_001]

Coordinates

chr6:-:24039373..24046914

Molecular Weight (calculated)

45465.3 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.092

Length

416 amino acids

Sequence
(BLAST)

001: MGSGRVYRGG TSSRTSSSSS SHPSAPNQPP TETASTSITD TVNGSHHFRI SGFSLLKGMG IGKYTASDTF TVGGYDWAIY FYPDGKSLED GAAYVSLFIA
101: LASEGTDVRA LFELTLLDQS GKEQHKVHSH FGRTLEGGPY TLKYRGSMWG YKRFFRRSAL ESSAYLKDDC LLVNCSVGVV RSHTEGPKIY TIAVPSSNIT
201: QNFGQLLDSG KGTDVSFEVD GEIFNAHKLV LAARSPVFRA QLFGPMKDRN MHCIKVEDME TPVFKALLHF IYWDSLPALE ELAGLNTKCA STLMAQHLLA
301: AADRYALDRL KILCEVKLCE DVAINTVATT LALAEQHHCS QLKSVCLKFV ALPENLRAVM QTEGFEYLKV SCPSILIELL ALVARIGENS LTSSVYSSDA
401: LLDGSDANGR RVKPRI

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.