CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66705	Canola	cytosol	88.18	96.28
AT5G19000.2	Thale cress	plastid	85.45	85.07
CDX92567	Canola	cytosol	84.32	84.51
CDY13941	Canola	cytosol	83.64	83.83
CDY58342	Canola	cytosol	72.95	79.65
CDY08064	Canola	cytosol	72.73	78.62
CDY05245	Canola	cytosol	70.68	78.54
CDY24708	Canola	cytosol	70.91	77.42
CDY02591	Canola	cytosol	69.09	76.0
CDY18844	Canola	cytosol	72.95	74.83
VIT_05s0020g02520.t01	Wine grape	plastid	67.05	72.3
HORVU2Hr1G023850.1	Barley	cytosol, plastid	60.68	68.11
GSMUA_Achr6P16160_001	Banana	plastid	63.64	67.15
GSMUA_Achr6P23740_001	Banana	plastid	62.95	66.59
Zm00001d022366_P001	Maize	plastid	62.5	65.17
Solyc01g080250.2.1	Tomato	plastid	60.0	64.86
PGSC0003DMT400011115	Potato	plastid	59.77	64.62
Zm00001d007068_P001	Maize	plastid	62.5	64.55
EER99824	Sorghum	plastid	62.05	64.08
Os07t0655300-01	Rice	plastid	62.95	63.82
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	61.59	63.76
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	61.59	63.76
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	61.59	63.76
CDX93238	Canola	cytosol	50.68	56.31
CDY07031	Canola	cytosol	50.23	55.39
CDY07638	Canola	cytosol	49.32	54.25
CDY61778	Canola	cytosol	49.77	51.9
CDX70957	Canola	plastid	46.82	50.24
CDX88828	Canola	plastid	46.59	50.0
CDY29955	Canola	plastid	50.45	49.44
CDY09093	Canola	cytosol, plastid	39.55	47.41
CDY71585	Canola	cytosol	19.77	43.07
CDY16586	Canola	cytosol	15.68	39.66
CDY67137	Canola	endoplasmic reticulum	32.05	39.61
CDX93236	Canola	cytosol	33.64	36.27

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlants:CDX70860	ProteinID:CDX70860	ProteinID:CDX70860.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00140757001	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0004EEFC7E	SEG:seg

Description

BnaC03g09440D

Coordinates

chrLK031791:+:2427813..2430110

Molecular Weight (calculated)

48779.5 Da

IEP (calculated)

7.914

GRAVY (calculated)

-0.147

Length

440 amino acids

Sequence
(BLAST)

001: MNTTRVCGEV SKSATKPLTV STSLTETVNG FHEFKISGYS LTKGVGVGKY VASDTFTVGG HSWAVYFYPD GKSPEDNSSH VSLFIALASE GADVRALFEL
101: TLVDQSGNDK HKVHSHFGRA LESGPYALKY RGSMWGYKRF FRRDSLETSD YLKDNSLLVR CRVGVVKSCT EGPRDYNISV PVSNLGQQLG SLLESGKGCD
201: VTFEVDGETF SAHKLVLATR SPVFRAQLFG PLRDRDTDRI EIEDVEAPIF KVRPLILFLG FMMFCSRMYH PGSSPGALLL LSLLTRDKVL LHFIYWDELP
301: DMQELIGTDS KSASTLVAQH LLAAADRYAL ERLKAICESK LCEGITVNTV ATTLALAEQH HCFQLKAVCL KFVASPENLK AVMQTDGFDY LKRSCPSLLT
401: ELLKYLARLR EHSVTAPGHP KDIFADGCDS NGRRVKQRLH

Best Arabidopsis Sequence Match ( AT5G19000.2 )
(BLAST)

001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLPLT LLLIVYSRMY HPGSSPGALL LFSSLLTRDK VLLHFIYWDE
301: LPDMQELIGT DSTLASTLVA QHLLAAADRY ALERLKAICE SKLCEGVAIN TVATTLALAE QHHCLQLKAV CLKFVALPEN LKAVMQTDGF DYLKESCPSL
401: LTELLQYVAR LSEHSVIVSG HRKEIFADGC DASGRRVKPR LH

Arabidopsis Description

BPM1BPM1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.